Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0849 ATGATGCAAACCATGGACTTAACTCCAATAGTAACCACCACAAACACAACAAGCGCTACCTCAAAATCTCCCGAACCCGACGGCGGCGGAACACCCACGCGCCTCTACACCTCTGCCTCAGCCAAGCAACTAAACTCCACCAACGGCATCCTCAAACTCCACCACCACCCTCTCAACCAACACCTCCACGGCCTTCCCCACAACAATAATCGCCCTCTAACCGTCGTCACCTACAAAGAATGTCTCAAAAACCACGCCGCCACCTTAGGAACCCACGCACTAGACGGCTGTGGAGAATTCATGCCATCTCCCAGCTCCAAGTCAGCTGACCCTACCTCGCTAAAATGCGCCGCCTGTGGCTGCCACCGTAATTTCCACCGCAAAGATCCGGAAGAACCCATCTCCCCCACCGCCGCCGCCGCTACTACTACCACCACCACTCCCACCCATTTAATCGAATACCAACCCCACCACCGCCACCACCCACTTCCTCCACCAGCACCTTCGCGGCTAATCCCACTCTCCAACCGGAGCCCAAACTCCTCCTCTCCGCCGCCGATCTCCTCCTCTTACTACCCCTCAGCTCCCCACATGCTCTTAGCTCTCTCCTCGGGCTTATCCGCTCCACTAGAAAACTCTCCAACTCATTCTAGGAAGAGATTCAGGACTAAGTTCAGTCAAGAACAGAAGCTCAAGATGTACCATTTAGCCGAGAGAGTCGGCTGGAAGATGCAGAGAAGAGACGATGAGCTGATTCAGGATTTCTGTAACGAAATCGGAATTGACAGGGGAGTGCTCAAGGTCTGGTTGCATAATAATAAGAATTCGTTGGGAAGGAAGGCGGTTAATATTAATAACAACAATAACACTAATATTAATATTAATGGTGGTGGTAGGGCTCCTGATCAGGAGATCGTTGGACATAACAGAGTACAGAATGATGATAAGGAAGAAGAAGATGATCATGAAGAGGACAATGATCATCATATGGGTAGAGATGAAGAGAATGAACAGCATGCCGGCGTTAATGGCGGATCTTCTTAA 1044 50.67 MMQTMDLTPIVTTTNTTSATSKSPEPDGGGTPTRLYTSASAKQLNSTNGILKLHHHPLNQHLHGLPHNNNRPLTVVTYKECLKNHAATLGTHALDGCGEFMPSPSSKSADPTSLKCAACGCHRNFHRKDPEEPISPTAAAATTTTTTPTHLIEYQPHHRHHPLPPPAPSRLIPLSNRSPNSSSPPPISSSYYPSAPHMLLALSSGLSAPLENSPTHSRKRFRTKFSQEQKLKMYHLAERVGWKMQRRDDELIQDFCNEIGIDRGVLKVWLHNNKNSLGRKAVNINNNNNTNININGGGRAPDQEIVGHNRVQNDDKEEEDDHEEDNDHHMGRDEENEQHAGVNGGSS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9062314 9063828 + Conep16aG0321600.1 Cone16ag0849 455283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0849 347 NCBIfam homeobox domain, ZF-HD class 218 275 IPR006455 -
Cone16ag0849 347 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 129 IPR006456 -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 155 190 - -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 287 347 - -
Cone16ag0849 347 SUPERFAMILY Homeodomain-like 211 279 IPR009057 -
Cone16ag0849 347 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 129 IPR006456 -
Cone16ag0849 347 FunFam Zinc-finger homeodomain protein 2 206 279 - -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 323 339 - -
Cone16ag0849 347 Pfam ZF-HD protein dimerisation region 76 130 IPR006456 -
Cone16ag0849 347 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 59 276 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone16ag0849 347 Gene3D - 205 278 - -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 1 35 - -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 173 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0849 Cone-Chr16:9062314 Cone20ag0539 Cone-Chr20:2995418 2.64E-39 dispersed
Cone16ag0849 Cone-Chr16:9062314 Cone16ag0850 Cone-Chr16:9068120 9.80E-15 tandem
Cone16ag0168 Cone-Chr16:1058464 Cone16ag0849 Cone-Chr16:9062314 3.91E-16 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone2ag0846 Cone-Chr2:34450051 3.36E-15 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone2ag0193 Cone-Chr2:1019885 3.64E-163 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone4ag0542 Cone-Chr4:2443471 1.43E-68 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone6ag0586 Cone-Chr6:2878195 8.29E-46 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone7ag0516 Cone-Chr7:2383591 5.43E-66 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone9ag0589 Cone-Chr9:2782954 4.77E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44973 PF12054 DUF3535 5.80E-100 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0849 - - - 0.0