Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0849 ATGATGCAAACCATGGACTTAACTCCAATAGTAACCACCACAAACACAACAAGCGCTACCTCAAAATCTCCCGAACCCGACGGCGGCGGAACACCCACGCGCCTCTACACCTCTGCCTCAGCCAAGCAACTAAACTCCACCAACGGCATCCTCAAACTCCACCACCACCCTCTCAACCAACACCTCCACGGCCTTCCCCACAACAATAATCGCCCTCTAACCGTCGTCACCTACAAAGAATGTCTCAAAAACCACGCCGCCACCTTAGGAACCCACGCACTAGACGGCTGTGGAGAATTCATGCCATCTCCCAGCTCCAAGTCAGCTGACCCTACCTCGCTAAAATGCGCCGCCTGTGGCTGCCACCGTAATTTCCACCGCAAAGATCCGGAAGAACCCATCTCCCCCACCGCCGCCGCCGCTACTACTACCACCACCACTCCCACCCATTTAATCGAATACCAACCCCACCACCGCCACCACCCACTTCCTCCACCAGCACCTTCGCGGCTAATCCCACTCTCCAACCGGAGCCCAAACTCCTCCTCTCCGCCGCCGATCTCCTCCTCTTACTACCCCTCAGCTCCCCACATGCTCTTAGCTCTCTCCTCGGGCTTATCCGCTCCACTAGAAAACTCTCCAACTCATTCTAGGAAGAGATTCAGGACTAAGTTCAGTCAAGAACAGAAGCTCAAGATGTACCATTTAGCCGAGAGAGTCGGCTGGAAGATGCAGAGAAGAGACGATGAGCTGATTCAGGATTTCTGTAACGAAATCGGAATTGACAGGGGAGTGCTCAAGGTCTGGTTGCATAATAATAAGAATTCGTTGGGAAGGAAGGCGGTTAATATTAATAACAACAATAACACTAATATTAATATTAATGGTGGTGGTAGGGCTCCTGATCAGGAGATCGTTGGACATAACAGAGTACAGAATGATGATAAGGAAGAAGAAGATGATCATGAAGAGGACAATGATCATCATATGGGTAGAGATGAAGAGAATGAACAGCATGCCGGCGTTAATGGCGGATCTTCTTAA 1044 50.67 MMQTMDLTPIVTTTNTTSATSKSPEPDGGGTPTRLYTSASAKQLNSTNGILKLHHHPLNQHLHGLPHNNNRPLTVVTYKECLKNHAATLGTHALDGCGEFMPSPSSKSADPTSLKCAACGCHRNFHRKDPEEPISPTAAAATTTTTTPTHLIEYQPHHRHHPLPPPAPSRLIPLSNRSPNSSSPPPISSSYYPSAPHMLLALSSGLSAPLENSPTHSRKRFRTKFSQEQKLKMYHLAERVGWKMQRRDDELIQDFCNEIGIDRGVLKVWLHNNKNSLGRKAVNINNNNNTNININGGGRAPDQEIVGHNRVQNDDKEEEDDHEEDNDHHMGRDEENEQHAGVNGGSS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9062314 9063828 + Conep16aG0321600.1 Cone16ag0849 455283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0849 347 NCBIfam homeobox domain, ZF-HD class 218 275 IPR006455 -
Cone16ag0849 347 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 129 IPR006456 -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 155 190 - -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 287 347 - -
Cone16ag0849 347 SUPERFAMILY Homeodomain-like 211 279 IPR009057 -
Cone16ag0849 347 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 129 IPR006456 -
Cone16ag0849 347 FunFam Zinc-finger homeodomain protein 2 206 279 - -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 323 339 - -
Cone16ag0849 347 Pfam ZF-HD protein dimerisation region 76 130 IPR006456 -
Cone16ag0849 347 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 59 276 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone16ag0849 347 Gene3D - 205 278 - -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 1 35 - -
Cone16ag0849 347 MobiDBLite consensus disorder prediction 173 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0849 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0849 Cone-Chr16:9062314 Cone20ag0539 Cone-Chr20:2995418 2.64E-39 dispersed
Cone16ag0849 Cone-Chr16:9062314 Cone16ag0850 Cone-Chr16:9068120 9.80E-15 tandem
Cone16ag0168 Cone-Chr16:1058464 Cone16ag0849 Cone-Chr16:9062314 3.91E-16 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone2ag0846 Cone-Chr2:34450051 3.36E-15 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone2ag0193 Cone-Chr2:1019885 3.64E-163 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone4ag0542 Cone-Chr4:2443471 1.43E-68 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone6ag0586 Cone-Chr6:2878195 8.29E-46 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone7ag0516 Cone-Chr7:2383591 5.43E-66 wgd
Cone16ag0849 Cone-Chr16:9062314 Cone9ag0589 Cone-Chr9:2782954 4.77E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44973 PF12054 DUF3535 5.80E-100 No_clan Cone TF