Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone16ag0856 | ATGGCGGAACCTATTGATGCAGCAGCTAAGACGACGACTGCGGCAGCAGCATTACCACCTGAGGCAGAGAAGAAGAAGGAACAGAGCTTACCCTTTTACAAGCTCTTTTCTTTTGCTGATAAGTATGACTATTTCTTAATGTCTCTTGGAAGTTTAGGAGCTATTATCCATGGCTCCTCCATGCCCGTCTTCTTCCTCTTGTTTGGTCAAATGGTCAATGGGTTTGGAAAAAATCAATCTGATGTCAAGAAAATGACTGATGAAGTCTGCAAGTATGCTCTATATTTTGTGTATCTTGGACTTATTGTGTGCTTCTCATCCTATGCGGAGATTGCATGCTGGATGTATAGTGGGGAAAGGCAAGTGAGTACACTGAGGAAGAAGTATTTAGAGGCAGTTTTGAAACAGGACGTTGGCTTCTTTGACACTGATGCTAGAACTGGTGATGTTGTTTTCAGTGTATCTACAGACACTCTTCTTGTCCAAGATGCCATTAGCGAGAAGGTGGGCAATTTCATTCATTATCTATCAACGTTTTTGGCTGGATTAGTAGTTGGCTTTGTATCAGCATGGAGATTAGCACTGTTAAGTGTAGCAGTAATTCCCGGCATTGCTTTTGCTGGTGGATTATATGCTTATACTCTTACCGGGCTTACTTCCAAGAGCCGAGAATCGTATGCCAATGCAGGTGTTATTGCCGAGCAGGCAATTGCTCAAGTCCGGACGGTTTACTCCTACGTAGGGGAGAGCAAGGCTCTAAATTCATACTCTGACGCAATACAGAACACATTGAAACTAGGATACAAGGCTGGAATAGCTAAAGGCTTAGGCTTGGGATGTACTTACGGAATTGCCTGTATGTCGTGGGCGCTAGTTTTCTGGTATGCTGGTGTCTTTATTCGAAACGGCCAAACCGATGGCGGCCAAGCCTTCACCTCTATTTTCTCCGCCATTGTGGGCGGCATGAGTTTGGGGCAGTCATTTTCAAATTTAGGAGCGTTTAGCAAAGGCAAAGCAGCCGGATATAAATTGATGGAGATTATTAACCAGAAGCCGACTATAATTCAAGACCCTTTAGATGGAAAATGCTTGTCTGAAGTTAATGGGAATATAGAGTTAAAGAATGTAACTTTTAGTTATCCGTCAAGGCCTGACGTGATTATTTTCCGGGATTTTTCAATTTTTTTTCCGGCCGGAAAGACAGTAGCAGTTGTGGGTGGAAGTGGGTCCGGGAAAAGCACAGTTGTTTCTCTGATCGAACGGTTCTACGATCCTAGTCAAGGGGAAATCTTGCTTGATGGTGTGGATATAAAGACACTCCAATTGAAATGGTTAAGAGATCAAATCGGATTGGTGAATCAAGAGCCGGCTCTATTTGCAACAACAATACTTGAGAACATTCTATATGGAAAACCCGATTCAACAATGGCTGAAGTAGAAGCTGCTTCTTCAGCAGCAAATGCACATAGTTTCATTACATTACTTCCAAATGGATATAACACTCAGGTTGGAGAGAGAGGAGTCCAACTGTCAGGCGGGCAAAAGCAAAGGATAGCTATAGCTAGAGCAATGCTGAAAGACCCGAAAATCCTCCTCCTTGATGAAGCAACTAGTGCACTTGATGCGGGGTCGGAGAGCATCGTTCAAGAAGCTCTAGACCGTCTGATGGTTGGAAGAACAACAGTCATGATTGCACATCGTCTCTCCACCATAAGAAATGTGGACTCTATCGCTGTAATACAACAAGGGCAAGTTGTAGAGACCGGATCTCATGATGAACTTGTTGCCAAAGCAGGGGCATATGCGACTTTGATCCGGTTCCAAGAAATGGTCAGGAACAAGGACTTTTCCACAAACCCATCTACACGTAGAACACGTTCGTCTCGTTTAAGCCACTCTCTGTCGACAAAGTCCTTGAGTCTTAGATCGGGTAGTTTACGGAATCTAAGCTATTCATATAGCACTGGGGCAGATGGAAGGATCGAGATGGTCTCCAATGCTGAGACAGACCGGAAAAATCCTGCCCCAGATGGATATTTTTTCCGGTTACTAAAACTTAATGCACCCGAATGGCCTTATTCTATCATGGGTGCTATAGGGTCGGTTCTTTCGGGTTTCATCGGTCCCACATTTGCCATTGTTATGAGTAACATGATCGAGGTTTTCTACTACAGAAACCCGGCTTCTATGGAGCGAAAGACAAAGGAGTATGTGTTTATCTATATCGGAGCTGGACTTTATGCGGTGGTCGCATATTTGATCCAGCATTACTTCTTTACAATCATGGGAGAAAACCTTACTACAAGAGTTAGAAGAATGATGCTTGCCGCCATTTTAAGGAATGAGGTTGGATGGTTTGACGAAGAGGAACATAACTCGAGCCTTGTGGCGGCCCGGTTAGCTACGGATGCGGCCGATGTGAAATCTGCTATCGCCGAGCGGATTTCGGTTATCTTGCAGAACATGACATCACTGATGACATCATTCATAGTTGCTTTCATTGTGGAATGGAGAGTCTCTCTTCTTATCTTGGGAACCTTCCCTCTTCTAGTGCTCGCCAATTTCGCCCAACAACTTTCACTAAAAGGGTTTGCCGGAGACACGGCCAAAGCCCATGCAAAAACAAGCATGATAGCCGGAGAGGGAGTGAGCAATATACGAACGGTTGCAGCCTTTAATGCACAGGACAAGATACTATCTCTATTCTCCCATGAGCTCCGGGTCCCACAGGTCCGCAGCCTTCGTAGAAGTCAAACTGCTGGCCTACTATTTGGTCTCTCTCAGCTCGCTCTCTATGCCTCCGAAGCTCTCATCTTATGGTACGGGGTCCACCTTGTTAGCAAAGGTCACTCCACCTTCTCAAAGGTCATTAAAGTCTTTGTCGTATTAGTCGTAACGGCTAATTCAGTTGCAGAAACGGTTAGCCTAGCTCCGGAAATCATCCGGGGCGGTGAAGCAGTTGGTTCGGTCTTCTCGATCCTTGATCGGTCCACTAGGATTGACTCGGACGATCCCGAGGCAGAACCGGTTGAATCGCTTCGAGGTGAGATTGAATTTCGACATGTCGACTTCGCATATCCGGCTCGGCCTGATATCATGGTGTTTAAGGATCTTAGTCTGAGGATCCGAGCGGGACAGAGCCAGGCTCTGGTGGGGGCAAGTGGGTCTGGGAAGAGTTCCGTGATTGCGTTGATTGAGAGGTTCTATGATCCAATCGTTGGGAAAGTCATGATCGATGGAAAAGACATTAGGCGATATAACTTGAAGTCTTTGAGGCTCAAAATGGGGCTCGTACAACAAGAGCCGGCTCTATTCGCCTCGAGCATTTTCGATAACATTGCATACGGGAAAGAAGGGGCCACAGAGACTGAGGTGATAGAAGCGGCTCGAGCTGCCAATGTTCACGGGTTCGTTAGTAGTTTGCCTGATGGCTACAAGACACCAGTTGGGGAGAGAGGGGTACAACTTTCAGGCGGACAAAAACAACGGATTGCAATTGCTCGAGCCGTTCTTAAGGACCCAGCGATTCTTCTCCTAGATGAGGCTACCAGTGCACTTGATGCGGAATCGGAGTGTATGTTGCAAGAAGCGCTAGAGCGGCTCATGAGGGGTCGAACCACCGTGCTTGTTGCTCATAGATTATCGACTATTCGAAGGGTGGATTGTATTGGGGTGGTGCAAGATGGTCGCATCGTGGAACAAGGTAGCCATTTGGACCTCATAAACCGGCCTGATGGGGCTTATTCTAGACTCTTGCAGTTACAAAACCATCACATATGA | 3780 | 46.08 | MAEPIDAAAKTTTAAAALPPEAEKKKEQSLPFYKLFSFADKYDYFLMSLGSLGAIIHGSSMPVFFLLFGQMVNGFGKNQSDVKKMTDEVCKYALYFVYLGLIVCFSSYAEIACWMYSGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGIAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGQAFTSIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIIQDPLDGKCLSEVNGNIELKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPSQGEILLDGVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDSTMAEVEAASSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVMIAHRLSTIRNVDSIAVIQQGQVVETGSHDELVAKAGAYATLIRFQEMVRNKDFSTNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFFRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMSNMIEVFYYRNPASMERKTKEYVFIYIGAGLYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLMTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFSHELRVPQVRSLRRSQTAGLLFGLSQLALYASEALILWYGVHLVSKGHSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDSDDPEAEPVESLRGEIEFRHVDFAYPARPDIMVFKDLSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRYNLKSLRLKMGLVQQEPALFASSIFDNIAYGKEGATETEVIEAARAANVHGFVSSLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECMLQEALERLMRGRTTVLVAHRLSTIRRVDCIGVVQDGRIVEQGSHLDLINRPDGAYSRLLQLQNHHI | 1259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 9101076 | 9107952 | + | Conep16aG0322400.1 | Cone16ag0856 | 455290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone16ag0856 | 1259 | Pfam | ABC transporter | 1036 | 1184 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0856 | 1259 | FunFam | ABC transporter B family member 19 | 1007 | 1256 | - | - | |
| Cone16ag0856 | 1259 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 364 | 608 | IPR027417 | - | |
| Cone16ag0856 | 1259 | CDD | ABC_MTABC3_MDL1_MDL2 | 371 | 608 | - | - | |
| Cone16ag0856 | 1259 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 49 | 336 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone16ag0856 | 1259 | ProSitePatterns | ABC transporters family signature. | 510 | 524 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0856 | 1259 | FunFam | ABC transporter B family member 19 | 361 | 609 | - | - | |
| Cone16ag0856 | 1259 | SMART | AAA_5 | 398 | 584 | IPR003593 | GO:0016887(InterPro) | |
| Cone16ag0856 | 1259 | SMART | AAA_5 | 1044 | 1230 | IPR003593 | GO:0016887(InterPro) | |
| Cone16ag0856 | 1259 | Gene3D | ABC transporter type 1, transmembrane domain | 984 | 1006 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone16ag0856 | 1259 | SUPERFAMILY | ABC transporter transmembrane region | 682 | 996 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone16ag0856 | 1259 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 684 | 1000 | - | - | |
| Cone16ag0856 | 1259 | FunFam | ABC transporter B family member 1 | 674 | 983 | - | - | |
| Cone16ag0856 | 1259 | CDD | ABC_MTABC3_MDL1_MDL2 | 1017 | 1255 | - | - | |
| Cone16ag0856 | 1259 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1007 | 1255 | IPR027417 | - | |
| Cone16ag0856 | 1259 | Pfam | ABC transporter | 391 | 538 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0856 | 1259 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 47 | 344 | - | - | |
| Cone16ag0856 | 1259 | FunFam | ABC transporter B family member 1 | 34 | 370 | - | - | |
| Cone16ag0856 | 1259 | Pfam | ABC transporter transmembrane region | 51 | 320 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone16ag0856 | 1259 | Pfam | ABC transporter transmembrane region | 695 | 965 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone16ag0856 | 1259 | Gene3D | - | 361 | 609 | IPR027417 | - | |
| Cone16ag0856 | 1259 | Gene3D | - | 1007 | 1256 | IPR027417 | - | |
| Cone16ag0856 | 1259 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1017 | 1253 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0856 | 1259 | ProSitePatterns | ABC transporters family signature. | 1156 | 1170 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0856 | 1259 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 371 | 607 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone16ag0856 | 1259 | PANTHER | ABC TRANSPORTER B FAMILY | 11 | 628 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cone16ag0856 | 1259 | SUPERFAMILY | ABC transporter transmembrane region | 34 | 357 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone16ag0856 | 1259 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 695 | 982 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone16ag0856 | 1259 | Gene3D | ABC transporter type 1, transmembrane domain | 34 | 983 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0226 | Cone-Chr10:1108440 | Cone16ag0856 | Cone-Chr16:9101076 | 0 | dispersed | |
| Cone13ag1253 | Cone-Chr13:9519558 | Cone16ag0856 | Cone-Chr16:9101076 | 0 | dispersed | |
| Cone16ag0856 | Cone-Chr16:9101076 | Cone19ag1238 | Cone-Chr19:8534464 | 0 | dispersed | |
| Cone1ag0792 | Cone-Chr1:53887890 | Cone16ag0856 | Cone-Chr16:9101076 | 1.12E-61 | transposed | |
| Cone1ag1048 | Cone-Chr1:55218792 | Cone16ag0856 | Cone-Chr16:9101076 | 6.90e-313 | transposed | |
| Cone7ag1900 | Cone-Chr7:12180404 | Cone16ag0856 | Cone-Chr16:9101076 | 0 | transposed | |
| Cone16ag0856 | Cone-Chr16:9101076 | Cone2ag0187 | Cone-Chr2:985768 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone16ag0856 | K05658 | - | rcu:8276048 | 2158.64 |