Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0859 ATGGCCTTCCCACCGCCTCATAGCTTCATGCTCCATTATAGTAGTCCTCCTGATCATCAAGACCAGGCCCCGCCACACCATTTCCATGGCGGTCACTTACCTTTTGCGATGAAGAGATCGACATCATTTTCAGGAGTTGAGCATCAAAATAATTTTGATGAAGTATATGGGGATGACGGGCTGTCGGATGACGGCTCGCAACTTGGGGAGAAGAAGAAGAGGCTGAATATAGAGCAAGTGAAGGCTCTCGAGAAGAGCTTTGAGTTGGGAAATAAGCTTGAGCCTGAGAGGAAAGTGCAGTTGGCTAAGGCCTTAGGTATGCAGCCGAGACAGATTGCCATTTGGTTTCAAAACCGAAGAGCTCGTTGGAAAACCAAGCAGTTAGAGAAAGATTATGAGATTTTGAAGAAACAGTTCGATGCACTCAAGGCTGATAATGATGCACTTCAAACGCAACATACTAAACTTAATGCTGAGCTAATGGCTCTGAAAAGTAGAGATTTAAGCAATGCAAGCACTCATGAGAATAGTCCAGATATGAACTTAGATATGTCAAGAACTCCATTAATGAGCAGTCCCGTTTCTTCTCAAATAAGCGGCAAGAATCTGTTTCCGATAAGCCATCAACCTCATCAAGACACATCGAGATCAGACGGCCTGCATTGTCTCAAGATTAATGATGCACATGATCATGATCATCACCACCAGGTTCTTCATCATCAAGATAATGAACACAGCTTCAACATCATGTTCAATAGCATAGATGATCAACAAGCTGGGTTTTGGCCATGGCCTGATCATCATCATCAGCAACAGCAAAACAACTTCCACTGA 834 43.65 MAFPPPHSFMLHYSSPPDHQDQAPPHHFHGGHLPFAMKRSTSFSGVEHQNNFDEVYGDDGLSDDGSQLGEKKKRLNIEQVKALEKSFELGNKLEPERKVQLAKALGMQPRQIAIWFQNRRARWKTKQLEKDYEILKKQFDALKADNDALQTQHTKLNAELMALKSRDLSNASTHENSPDMNLDMSRTPLMSSPVSSQISGKNLFPISHQPHQDTSRSDGLHCLKINDAHDHDHHHQVLHHQDNEHSFNIMFNSIDDQQAGFWPWPDHHHQQQQNNFH 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9133183 9134762 + Conep16aG0322700.1 Cone16ag0859 455293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0859 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 243 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone16ag0859 277 Gene3D - 63 133 - -
Cone16ag0859 277 MobiDBLite consensus disorder prediction 1 33 - -
Cone16ag0859 277 Pfam Homeodomain 71 124 IPR001356 GO:0003677(InterPro)
Cone16ag0859 277 FunFam Homeobox-leucine zipper protein ATHB-13 63 130 - -
Cone16ag0859 277 SMART HOX_1 69 130 IPR001356 GO:0003677(InterPro)
Cone16ag0859 277 Pfam Homeobox associated leucine zipper 126 166 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0859 277 Coils Coil 118 166 - -
Cone16ag0859 277 PRINTS Lambda-repressor HTH signature 106 122 IPR000047 GO:0003677(InterPro)
Cone16ag0859 277 PRINTS Lambda-repressor HTH signature 97 106 IPR000047 GO:0003677(InterPro)
Cone16ag0859 277 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677(InterPro)
Cone16ag0859 277 SUPERFAMILY Homeodomain-like 61 128 IPR009057 -
Cone16ag0859 277 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone16ag0859 277 CDD homeodomain 71 127 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0859 Cone-Chr16:9133183 Cone19ag0090 Cone-Chr19:519877 1.06E-28 dispersed
Cone13ag0969 Cone-Chr13:8272664 Cone16ag0859 Cone-Chr16:9133183 9.28E-48 wgd
Cone16ag0859 Cone-Chr16:9133183 Cone19ag0959 Cone-Chr19:7311391 4.32E-49 wgd
Cone16ag0859 Cone-Chr16:9133183 Cone2ag0185 Cone-Chr2:961623 3.20E-149 wgd
Cone16ag0859 Cone-Chr16:9133183 Cone6ag0604 Cone-Chr6:2966504 1.16E-46 wgd
Cone16ag0859 Cone-Chr16:9133183 Cone9ag0609 Cone-Chr9:2879326 5.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44976 PF00400 WD40 0.028 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0859 K09338 - cit:102608732 281.182