Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0862 ATGTTGAGAGGCTTTGTGTTAATAGCTATCTTAGCCGTAGTGTTACCTACCCTTTACGCTCTTACAACTTCTGATGATAAATATTGGCATGATAGAATGCTTGAAGCCAGAGAGGCTAACAATAAGGCTGCCCATCCTGACCCTTTAAAGGAAACCCACCACTTTAACTTACATGCTCACAGGAGGATGCAGGCCACGAATCTCACACGCATATCAAGGCACCTAGGGGGTACCGAGGGTTGCAGGGCATCTAATCCAATCGATAAATGTTGGAGATGTGACAAGAATTGGGAGGCTAATCGGAAGAAGCTTGCGTCGTGCGTAATGGGTTTTGGACGCAAGACTACAGGAGGCGCAGCTGGTAAGATCTATGTGGTAACTGATGCATCAGATAATGACTTGGTGGAGCCTAAACCCGGTACTCTCCGATATGGCTGCCTCCAACCAAAACCACTTTGGATCATATTCAAGCAAAACATGAACATCAAATTGAAGGGGGAGCTTATGTTGACACCCGACAAGACCATTGACGGGCGTGGGGCTAAAGTTCACATTGCAAATGGTGGTTCTTTTAACATATTTCTTACAAAGAATATAATTATTCACGGGCTGCACATCCACAATATCGTACCTCTTTCAGGAGGTACTATTAGAGACTCCCCAATACACAAGGGAAGAAGGGGTAGGGCAGACGGTGATGCTATCGGCATCTTTGGATCATCAAATGTCTGGATTGATCATGTCTCCTTTAGTAACTGTGAAGATGGGCTTGTCGATGTTATTAACGGATCCACTGCTATTACTGTCTCAAATTGTCATTTCACAAAGCACGATCACGTCATGTTGTTGGGTGCTAGTGATGCAAACACCGATGATACAAAGATGCAAGTAACAGTTGCTTATAATCATTTCGATAAGGGTCTGGTCCAAAGGATGCCTAGATGTAGATCGGGTTTCTTCCATGTTGTTAACAATGATTATACTGAATGGGAAATGTATGCCATTGGTGGAACCCATAATCCTACCATTATGAGCCAGGGTAATCGCTTCTACGCTCCATCAAACCCTAATGCAAAGCAAGTGACATCACAAAACAAAGGTTGTACAAAATCAGAGTGGAAGAATTGGAAATGGACTTCACAGGGAGATCTACTGGAGAACGGAGCAATATTTATTCAATCCGGAGGTTCAGCATCACATGGTGGGCCAGAAATGATGAAGCCATTGCCGGCTAAAGGAATTGCTGCCATTACAGCCTCTGCAGGTGCTCTAGACTGCGTACCTAACAAACCATGTTAA 1299 44.11 MLRGFVLIAILAVVLPTLYALTTSDDKYWHDRMLEAREANNKAAHPDPLKETHHFNLHAHRRMQATNLTRISRHLGGTEGCRASNPIDKCWRCDKNWEANRKKLASCVMGFGRKTTGGAAGKIYVVTDASDNDLVEPKPGTLRYGCLQPKPLWIIFKQNMNIKLKGELMLTPDKTIDGRGAKVHIANGGSFNIFLTKNIIIHGLHIHNIVPLSGGTIRDSPIHKGRRGRADGDAIGIFGSSNVWIDHVSFSNCEDGLVDVINGSTAITVSNCHFTKHDHVMLLGASDANTDDTKMQVTVAYNHFDKGLVQRMPRCRSGFFHVVNNDYTEWEMYAIGGTHNPTIMSQGNRFYAPSNPNAKQVTSQNKGCTKSEWKNWKWTSQGDLLENGAIFIQSGGSASHGGPEMMKPLPAKGIAAITASAGALDCVPNKPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9144206 9145621 - Conep16aG0323000.1 Cone16ag0862 455296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0862 432 SMART amb_all 159 356 IPR002022 -
Cone16ag0862 432 PANTHER PECTATE LYASE 18-RELATED 15 428 IPR045032 GO:0030570(InterPro)
Cone16ag0862 432 Pfam Pectate lyase, N terminus 26 70 IPR007524 GO:0030570(InterPro)
Cone16ag0862 432 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cone16ag0862 432 PRINTS Pollen allergen Amb family signature 231 252 IPR018082 -
Cone16ag0862 432 PRINTS Pollen allergen Amb family signature 131 156 IPR018082 -
Cone16ag0862 432 PRINTS Pollen allergen Amb family signature 107 124 IPR018082 -
Cone16ag0862 432 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Cone16ag0862 432 PRINTS Pollen allergen Amb family signature 376 400 IPR018082 -
Cone16ag0862 432 PRINTS Pollen allergen Amb family signature 167 183 IPR018082 -
Cone16ag0862 432 SUPERFAMILY Pectin lyase-like 85 397 IPR011050 -
Cone16ag0862 432 Pfam Pectate lyase 168 350 IPR002022 -
Cone16ag0862 432 Gene3D - 84 425 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0862 Cone-Chr16:9144206 Cone7ag0370 Cone-Chr7:1620380 8.39E-149 dispersed
Cone16ag0862 Cone-Chr16:9144206 Cone16ag0863 Cone-Chr16:9159768 1.91E-283 tandem
Cone17ag1110 Cone-Chr17:8246004 Cone16ag0862 Cone-Chr16:9144206 3.55E-248 transposed
Cone16ag0862 Cone-Chr16:9144206 Cone18ag1333 Cone-Chr18:9223112 1.78E-161 wgd
Cone16ag0862 Cone-Chr16:9144206 Cone2ag0181 Cone-Chr2:945453 1.27E-279 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0862 K01728 - gmx:100801864 500.36