Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone16ag0863 | ATGGGTTATATTAAGTTGAGAGGGTTTGTGTTAATATCTATCTTAGCCGCAGTCATCCATACCCTTTACGCTGTTACAACTTCTGATGATAAATATTGGCATGATAGAGTGCTTGCGGCCAAGGAGGCTAACGATAAGGCTGCCCATCCTGATCCTTTGAAGCAAACCCACCACTTCAACTTTCATGCTCACAGGAGGATGCAGAGCATGAATCTCACACACATAGCAAGGAACCTAGGGAGTACTGGGGGTTGCGTGGCATCTAATCCAATCGATAAATGTTGGAGATGCGACCCGGATTGGGAGGCTAATCGGAAGAAGCTTGCGTCGTGCGTAATGGGTTTTGGACACGGGACTACAGGAGGTGCAGCTGGTGAAATCTACGAGGTAACCGATGCATCAGATAACGATTTGGCGGAGCCTAAACCCGGTACTCTCCGATATGGCTGCCTCCAAGAAAAACCACTTTGGATCATATTCAAGCAAGACATGAACATCAAACTGAATGGGGAGCTTATGTTGACACCCGACAAGACCGTTGACGGCCGTGGGGCTAAAATTCACATTGCAAATGGTGGTTCGTTTAACATATTTCTAACGAAGAATATCATCATTCACGGAATTCACATCCACAATATCGTAGGTCTCCCAGGAGGTCGTATTATCAGAGACTCCCCAGAACACGAGGGAAGAAGGGGTCCGTCAGATGGTGACGCTATCGGCATCTTTGGATCATCAAATGTCTGGATTGATCATGTCTCCTTCAGTACCTGTGAAGATGGGCTTGTCGATGCTATTAACGGATCCACTGCTATTACTATATCGAATTGTCATTTCACAAAGCACGATCATGTCATTTTGTTGGGTGCCAAAGATTCTAACACCGATGATGCAAAGATGCAAGTCACAGTTGCTTATAATCATTTCGATAAAGGTCTGGTCCAACGGATGCCTAGAGGCAGATCGGGTTTCTTCCATGTTGTTAACAATGATTATACTGAGTGGGAAATGTATGCCATTGGTGGAACCCATAATCCTACCATTATGAGCCAGGGTAATCGCTTCTATGCTCCATCGAACCCTAATGCAAAGCAAGTGACATCACAAAACAAAGGTTGTTCGGAATCAGAGTGGAAGAATTGGAAATGGAGTTCAGAGGGAGATGAACTGTTGAACGGAGCAATATTTGTTCAATCCGGAAGTTCAGTATCACATGGTGGGCCAGAAATGATCAAGGCATTGCCAGTTGAAGGAATTGCTGCCATTACAGGCTCTGCAGGTGCTCTAAACTGCGTTCCTAAACAACCATGTTAA | 1314 | 45.13 | MGYIKLRGFVLISILAAVIHTLYAVTTSDDKYWHDRVLAAKEANDKAAHPDPLKQTHHFNFHAHRRMQSMNLTHIARNLGSTGGCVASNPIDKCWRCDPDWEANRKKLASCVMGFGHGTTGGAAGEIYEVTDASDNDLAEPKPGTLRYGCLQEKPLWIIFKQDMNIKLNGELMLTPDKTVDGRGAKIHIANGGSFNIFLTKNIIIHGIHIHNIVGLPGGRIIRDSPEHEGRRGPSDGDAIGIFGSSNVWIDHVSFSTCEDGLVDAINGSTAITISNCHFTKHDHVILLGAKDSNTDDAKMQVTVAYNHFDKGLVQRMPRGRSGFFHVVNNDYTEWEMYAIGGTHNPTIMSQGNRFYAPSNPNAKQVTSQNKGCSESEWKNWKWSSEGDELLNGAIFVQSGSSVSHGGPEMIKALPVEGIAAITGSAGALNCVPKQPC | 437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 9159768 | 9161165 | - | Conep16aG0323200.1 | Cone16ag0863 | 455297 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone16ag0863 | 437 | Pfam | Pectate lyase | 176 | 355 | IPR002022 | - | |
Cone16ag0863 | 437 | Pfam | Pectate lyase, N terminus | 30 | 73 | IPR007524 | GO:0030570(InterPro) | |
Cone16ag0863 | 437 | Gene3D | - | 88 | 430 | IPR012334 | - | |
Cone16ag0863 | 437 | PRINTS | Pollen allergen Amb family signature | 236 | 257 | IPR018082 | - | |
Cone16ag0863 | 437 | PRINTS | Pollen allergen Amb family signature | 111 | 128 | IPR018082 | - | |
Cone16ag0863 | 437 | PRINTS | Pollen allergen Amb family signature | 316 | 335 | IPR018082 | - | |
Cone16ag0863 | 437 | PRINTS | Pollen allergen Amb family signature | 381 | 405 | IPR018082 | - | |
Cone16ag0863 | 437 | PRINTS | Pollen allergen Amb family signature | 171 | 187 | IPR018082 | - | |
Cone16ag0863 | 437 | PRINTS | Pollen allergen Amb family signature | 135 | 160 | IPR018082 | - | |
Cone16ag0863 | 437 | PRINTS | Pollen allergen Amb family signature | 338 | 357 | IPR018082 | - | |
Cone16ag0863 | 437 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 433 | IPR045032 | GO:0030570(InterPro) | |
Cone16ag0863 | 437 | SMART | amb_all | 163 | 361 | IPR002022 | - | |
Cone16ag0863 | 437 | SUPERFAMILY | Pectin lyase-like | 89 | 402 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag0863 | Cone-Chr16:9159768 | Cone2ag0181 | Cone-Chr2:945453 | 3.61E-301 | dispersed | |
Cone16ag0863 | Cone-Chr16:9159768 | Cone16ag0865 | Cone-Chr16:9168090 | 6.66E-66 | proximal | |
Cone16ag0863 | Cone-Chr16:9159768 | Cone16ag0866 | Cone-Chr16:9168457 | 1.29E-46 | proximal | |
Cone16ag0862 | Cone-Chr16:9144206 | Cone16ag0863 | Cone-Chr16:9159768 | 1.91E-283 | tandem | |
Cone16ag0863 | Cone-Chr16:9159768 | Cone16ag0864 | Cone-Chr16:9167743 | 3.74E-56 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone16ag0863 | K01728 | - | gmx:100801864 | 476.092 |