Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0863 ATGGGTTATATTAAGTTGAGAGGGTTTGTGTTAATATCTATCTTAGCCGCAGTCATCCATACCCTTTACGCTGTTACAACTTCTGATGATAAATATTGGCATGATAGAGTGCTTGCGGCCAAGGAGGCTAACGATAAGGCTGCCCATCCTGATCCTTTGAAGCAAACCCACCACTTCAACTTTCATGCTCACAGGAGGATGCAGAGCATGAATCTCACACACATAGCAAGGAACCTAGGGAGTACTGGGGGTTGCGTGGCATCTAATCCAATCGATAAATGTTGGAGATGCGACCCGGATTGGGAGGCTAATCGGAAGAAGCTTGCGTCGTGCGTAATGGGTTTTGGACACGGGACTACAGGAGGTGCAGCTGGTGAAATCTACGAGGTAACCGATGCATCAGATAACGATTTGGCGGAGCCTAAACCCGGTACTCTCCGATATGGCTGCCTCCAAGAAAAACCACTTTGGATCATATTCAAGCAAGACATGAACATCAAACTGAATGGGGAGCTTATGTTGACACCCGACAAGACCGTTGACGGCCGTGGGGCTAAAATTCACATTGCAAATGGTGGTTCGTTTAACATATTTCTAACGAAGAATATCATCATTCACGGAATTCACATCCACAATATCGTAGGTCTCCCAGGAGGTCGTATTATCAGAGACTCCCCAGAACACGAGGGAAGAAGGGGTCCGTCAGATGGTGACGCTATCGGCATCTTTGGATCATCAAATGTCTGGATTGATCATGTCTCCTTCAGTACCTGTGAAGATGGGCTTGTCGATGCTATTAACGGATCCACTGCTATTACTATATCGAATTGTCATTTCACAAAGCACGATCATGTCATTTTGTTGGGTGCCAAAGATTCTAACACCGATGATGCAAAGATGCAAGTCACAGTTGCTTATAATCATTTCGATAAAGGTCTGGTCCAACGGATGCCTAGAGGCAGATCGGGTTTCTTCCATGTTGTTAACAATGATTATACTGAGTGGGAAATGTATGCCATTGGTGGAACCCATAATCCTACCATTATGAGCCAGGGTAATCGCTTCTATGCTCCATCGAACCCTAATGCAAAGCAAGTGACATCACAAAACAAAGGTTGTTCGGAATCAGAGTGGAAGAATTGGAAATGGAGTTCAGAGGGAGATGAACTGTTGAACGGAGCAATATTTGTTCAATCCGGAAGTTCAGTATCACATGGTGGGCCAGAAATGATCAAGGCATTGCCAGTTGAAGGAATTGCTGCCATTACAGGCTCTGCAGGTGCTCTAAACTGCGTTCCTAAACAACCATGTTAA 1314 45.13 MGYIKLRGFVLISILAAVIHTLYAVTTSDDKYWHDRVLAAKEANDKAAHPDPLKQTHHFNFHAHRRMQSMNLTHIARNLGSTGGCVASNPIDKCWRCDPDWEANRKKLASCVMGFGHGTTGGAAGEIYEVTDASDNDLAEPKPGTLRYGCLQEKPLWIIFKQDMNIKLNGELMLTPDKTVDGRGAKIHIANGGSFNIFLTKNIIIHGIHIHNIVGLPGGRIIRDSPEHEGRRGPSDGDAIGIFGSSNVWIDHVSFSTCEDGLVDAINGSTAITISNCHFTKHDHVILLGAKDSNTDDAKMQVTVAYNHFDKGLVQRMPRGRSGFFHVVNNDYTEWEMYAIGGTHNPTIMSQGNRFYAPSNPNAKQVTSQNKGCSESEWKNWKWSSEGDELLNGAIFVQSGSSVSHGGPEMIKALPVEGIAAITGSAGALNCVPKQPC 437
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 9159768 9161165 - Conep16aG0323200.1 Cone16ag0863 455297
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0863 437 Pfam Pectate lyase 176 355 IPR002022 -
Cone16ag0863 437 Pfam Pectate lyase, N terminus 30 73 IPR007524 GO:0030570(InterPro)
Cone16ag0863 437 Gene3D - 88 430 IPR012334 -
Cone16ag0863 437 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Cone16ag0863 437 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Cone16ag0863 437 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Cone16ag0863 437 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Cone16ag0863 437 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Cone16ag0863 437 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Cone16ag0863 437 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Cone16ag0863 437 PANTHER PECTATE LYASE 18-RELATED 22 433 IPR045032 GO:0030570(InterPro)
Cone16ag0863 437 SMART amb_all 163 361 IPR002022 -
Cone16ag0863 437 SUPERFAMILY Pectin lyase-like 89 402 IPR011050 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0863 Cone-Chr16:9159768 Cone2ag0181 Cone-Chr2:945453 3.61E-301 dispersed
Cone16ag0863 Cone-Chr16:9159768 Cone16ag0865 Cone-Chr16:9168090 6.66E-66 proximal
Cone16ag0863 Cone-Chr16:9159768 Cone16ag0866 Cone-Chr16:9168457 1.29E-46 proximal
Cone16ag0862 Cone-Chr16:9144206 Cone16ag0863 Cone-Chr16:9159768 1.91E-283 tandem
Cone16ag0863 Cone-Chr16:9159768 Cone16ag0864 Cone-Chr16:9167743 3.74E-56 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0863 K01728 - gmx:100801864 476.092