Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0870 ATGGGTATGGATAATTGGGATGTGGGTAAAAAATCAAAGGAAGAGGGGAAGAAGCAGAAGAAGGTGAAGAAAGATGAGTCGGAGGACGAAGCGACTGGCTGTTGGGTTAAGCTGAGGTTCATTAGCAGCTGTATGCCTTCAAGATCAAAGGTTGATAGCTCTTTAAGTGGATCCAAAGTTGATAGTTTCATGAGTGGCACTACTAGTCATTACGAAAGTAAACCTAGAAACGAGGAAAGCAAAGATAAGCCCATTGCGGCTATAGGGTCCTCATCGACCACTAGTTATGCTGAAAGTACTTCTTCCACTCCAAAATTTAGTGAGGAACTAAAGGTTGCTTCTCAGCTTAGAAAGTTCACATTTAACGAGCTCAAGTTAGCAACAAGAAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGTGGGTTCGGATGTGTCTTCAAAGGTTGGATCGAAGAGAACGGAACAGCTCCGGTCAAACCCGGAACTGGTCTTACAGTGGCAGTCAAGACTCTTAACCATGATGGTCTTCAAGGTCATAAAGAGTGGCTTGCTGAAGTTAACTTTCTTGGGGATCTTATTCATCCGAATTTAGTTAAATTGGTTGGTTGCTGCATTGAAGATGATCAGAGGTTGTTAGTTTATGAGTTTATGCCTCGTGGAAGTTTGGAAAACCATCTCTTTAGAAAAGGGTCCCTGCCTCTTCCGTGGTCTATCAGAATGAAAATCGCACTTGGAGCCGCAAAGGGCCTAACTTTCCTTCACGAAGAAGCTCAAAGGCCAGTGATCTATCGTGATTTCAAAACATCCAACATTTTGTTAGACGCGGATTACAATGCAAAACTCTCCGATTTTGGACTTGCTAAAGATGGTCCTGAGGGAGATAAAACTCATGTATCTACCCGAGTTATGGGTACTTATGGCTATGCAGCACCTGAATATGTAATGACTGGGCATTTGACCTCGAAGAGTGATGTATACAGTTTTGGAGTGGTCCTACTCGAAATGCTGACCGGGCGAAGATCCATGGACAAGAACAGACCAAATGGGGAACACAACCTTGTGGAATGGGCCAGACCACTACTTGGAGACAGAAGAAGATTCTTCCGGATAATGGATCCACGTCTCGAAGGTCACTTCTCGATCAAAGGGGCCCAAAAGGCGGCCCAGTTGGCATCTCACTGCCTTTGCCGTGACCCGAAAGCCCGGCCTATGATGAGTGAAGTCGTTGAAACCTTGAAGCCTTTGCCGAACCTCAAGGATATGGCTAGTTCGTCGTACTACTATCAGACCATGCAATCAGGCCGGCTCAAACCCAACCCAAGTGTCAAAAATGGTGCGGGCCTTAGAACGCAATCCATGTTTGTACAGAGAAATGGACAGCATTTGAGAAGCTTGTCGAGCCCGAACGGTCCTCATGCTTCTCCATATCATTATCCGCCTCACTCTCCAAAACCATCACCAAAACCGAACAGCAGGGAACCATAA 1485 45.59 MGMDNWDVGKKSKEEGKKQKKVKKDESEDEATGCWVKLRFISSCMPSRSKVDSSLSGSKVDSFMSGTTSHYESKPRNEESKDKPIAAIGSSSTTSYAESTSSTPKFSEELKVASQLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLVGCCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLTFLHEEAQRPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDRRRFFRIMDPRLEGHFSIKGAQKAAQLASHCLCRDPKARPMMSEVVETLKPLPNLKDMASSSYYYQTMQSGRLKPNPSVKNGAGLRTQSMFVQRNGQHLRSLSSPNGPHASPYHYPPHSPKPSPKPNSREP 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9177028 9179962 - Conep16aG0323900.1 Cone16ag0870 455304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0870 494 ProSiteProfiles Protein kinase domain profile. 131 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0870 494 MobiDBLite consensus disorder prediction 456 494 - -
Cone16ag0870 494 CDD STKc_IRAK 137 415 - -
Cone16ag0870 494 MobiDBLite consensus disorder prediction 45 101 - -
Cone16ag0870 494 PANTHER OS01G0588500 PROTEIN-RELATED 95 416 IPR050823 -
Cone16ag0870 494 MobiDBLite consensus disorder prediction 46 71 - -
Cone16ag0870 494 MobiDBLite consensus disorder prediction 1 31 - -
Cone16ag0870 494 Gene3D Phosphorylase Kinase; domain 1 93 216 - -
Cone16ag0870 494 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524(InterPro)
Cone16ag0870 494 SUPERFAMILY Protein kinase-like (PK-like) 105 412 IPR011009 -
Cone16ag0870 494 FunFam Serine/threonine-protein kinase BIK1 98 216 - -
Cone16ag0870 494 MobiDBLite consensus disorder prediction 86 101 - -
Cone16ag0870 494 Gene3D Transferase(Phosphotransferase) domain 1 217 432 - -
Cone16ag0870 494 FunFam Probable serine/threonine-protein kinase PBL8 217 432 - -
Cone16ag0870 494 MobiDBLite consensus disorder prediction 7 31 - -
Cone16ag0870 494 MobiDBLite consensus disorder prediction 473 487 - -
Cone16ag0870 494 Pfam Protein kinase domain 134 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0870 494 MobiDBLite consensus disorder prediction 456 471 - -
Cone16ag0870 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0443 Cone-Chr10:2055247 Cone16ag0870 Cone-Chr16:9177028 3.97E-60 dispersed
Cone11ag1558 Cone-Chr11:10846959 Cone16ag0870 Cone-Chr16:9177028 1.39E-14 dispersed
Cone13ag1449 Cone-Chr13:10374584 Cone16ag0870 Cone-Chr16:9177028 4.76E-67 dispersed
Cone16ag0870 Cone-Chr16:9177028 Cone7ag0532 Cone-Chr7:2475645 3.41E-213 dispersed
Cone19ag1450 Cone-Chr19:9424338 Cone16ag0870 Cone-Chr16:9177028 8.90E-68 dispersed
Cone9ag0627 Cone-Chr9:2988239 Cone16ag0870 Cone-Chr16:9177028 1.33E-109 dispersed
Cone13ag0981 Cone-Chr13:8329200 Cone16ag0870 Cone-Chr16:9177028 3.84E-217 wgd
Cone16ag0870 Cone-Chr16:9177028 Cone19ag0973 Cone-Chr19:7376643 1.98E-210 wgd
Cone16ag0870 Cone-Chr16:9177028 Cone2ag0855 Cone-Chr2:34546743 1.13E-133 wgd
Cone16ag0870 Cone-Chr16:9177028 Cone2ag0176 Cone-Chr2:931601 0 wgd
Cone16ag0870 Cone-Chr16:9177028 Cone4ag0556 Cone-Chr4:2508175 1.34E-213 wgd
Cone16ag0870 Cone-Chr16:9177028 Cone6ag0626 Cone-Chr6:3169346 7.65E-108 wgd
Cone16ag0870 Cone-Chr16:9177028 Cone7ag0529 Cone-Chr7:2457001 2.41E-219 wgd
Cone16ag0870 Cone-Chr16:9177028 Cone9ag0611 Cone-Chr9:2891069 5.37E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82228 PF01556 DnaJ_C 8.80E-37 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0870 - - - 0.0