Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0871 ATGGCACCTAGGGAGTACCGGAGGTTGCGTGGCATCTACTCCAATCGATTATGTTGGAGATGCGATCCAAATTGGGAGGCTAATCGGAAGAAGCTCACATCGTGCGTAATGGGTTTTGGACGCGGGACTACAGGAGCCGCAGCCGGTGAAATCTACATGCTAACCGACGCATCAGATAACGACTTGGTAGACCCTAAATCCGGTACTCTCCGATATGGCTGCCTCCAAGAAAAACCACTTTGGATCATATTCAAGCAAGACATGAACATCAAATTGAAGGAGGAGCTTATGCTGACACCCGACAAGACCATCGACGCGCGTGGGGCTAAAGTTCACATTGCAAATGGAGGTTCATTTAACATATTTCTGACGAAGAATATCATCATTCACGGACTGCACATCCACAATATCGTAGGTCTCTCAGGAGGGACTGTTAGACACTCCCCAAAACAAAAGGGAACAAGGGGTCCGTCCGAAGGTGATACTATCGGCATCCTTGGATCATCAAATATCTGGATTGATCATGTCTCCTTGAGTAACTGTCAAGATGGGCTTATCTATGCTGTTAACTGGTCCGCTGCTATTACTATCTCGGACTCTCATTTCACAAAGCATGATCGCGTCATTTTGTTGGGTGCCAGTGATACAAATGCCGATGATGCAAAGATGGGAGTAACAGTTGCTATATAA 690 46.52 MAPREYRRLRGIYSNRLCWRCDPNWEANRKKLTSCVMGFGRGTTGAAAGEIYMLTDASDNDLVDPKSGTLRYGCLQEKPLWIIFKQDMNIKLKEELMLTPDKTIDARGAKVHIANGGSFNIFLTKNIIIHGLHIHNIVGLSGGTVRHSPKQKGTRGPSEGDTIGILGSSNIWIDHVSLSNCQDGLIYAVNWSAAITISDSHFTKHDRVILLGASDTNADDAKMGVTVAI 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9182839 9183528 + Conep16aG0324000.1 Cone16ag0871 455305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0871 229 PRINTS Pollen allergen Amb family signature 59 84 IPR018082 -
Cone16ag0871 229 PRINTS Pollen allergen Amb family signature 159 180 IPR018082 -
Cone16ag0871 229 PRINTS Pollen allergen Amb family signature 35 52 IPR018082 -
Cone16ag0871 229 PRINTS Pollen allergen Amb family signature 95 111 IPR018082 -
Cone16ag0871 229 Gene3D - 15 228 IPR012334 -
Cone16ag0871 229 PANTHER PECTATE LYASE 18-RELATED 18 228 IPR045032 GO:0030570(InterPro)
Cone16ag0871 229 Pfam Pectate lyase 98 221 IPR002022 -
Cone16ag0871 229 SUPERFAMILY Pectin lyase-like 17 227 IPR011050 -
Cone16ag0871 229 SMART amb_all 87 228 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0871 Cone-Chr16:9182839 Cone2ag0181 Cone-Chr2:945453 4.71E-129 dispersed
Cone16ag0865 Cone-Chr16:9168090 Cone16ag0871 Cone-Chr16:9182839 5.27E-49 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0871 K01728 - csv:101202789 256.529