Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0885 ATGGAAAACCCACCACCACCACCATCGCCGCTACAAGACATGGCACAAAATAATGACATGGTTGAAAAATCCTTCAAGCAAAGTGTTAGCATAATGAGCACCATTTCCGGCCCAAGCGTCAGTGTGAGCAGCATGAACAGCAACGGGAGCTCTACCTCTGCTTCTGCATTAACTCTTCATGAACCTTACAAACACGACGTTAGTGGTGAGAAGAGCAGTAGTAGCACTAGTGACGATCTAGACTCGAATGAAACGATTTCTAGAACCTCTTTCTGCCCTTCTAAACCACATAAGGGTAATGATATGAGATGGGAGTTGATCCAGAAACTGAAGATGAAAGATGGTGATTTGAGATTAGCCCATTTCAGGCTGTTGAAGAAGCTTGGATGTGGTGATATAGGAAGTGTTTATCTGGCTGAGTTAAGAGGGACGGGCTGTTTGTTTGCCATGAAAGTTATGGATAAAGGAATGTTAGTTGGCAGGAAAAAATTGTTGAGAGCTCAAACGGAAAGAGACATTCTTGGTTTGTTAGATCATCCTTTTCTTCCTACCCTTTACTCCCATTTTGAAACCGATAAGTTCTCTTGCTTGTTAATGGAGTTTTGCAATGGCGGCGACCTCCACACTCTCCGGCAACACCAGCCCGGCAAGTATTTCCTCGAGCAAGCCACACGGTTTTATGGATCACAAGTGTTGGTTGCTTTAGAGTACTTACACATGATGGGAGTGATCTATAGAGACTTAAAGCCAGAAAATGTATTGGTGAGAGATGATGGGCATATAATGCTGTCTGACTTTGATTTATCCTTAAGATGTTTTGTTAATCCTACTCTGGTTCATCAATCCACTCCAAGGAGTACTACTGGACCCACTTCAGGTGAAACCTCTTATTGCATCCAACCATCTTGCATTGCCCTTGATTCATCTTGCAAATTACCTCTTCATTGTGTCCAACCATCTTGCTTTACACCTCATTTTCTTGTAAACACCTCAAAAAAATCAACCAAGAAGAGACATGATCATAGACCAAGCGGGTCGGGTTCCAGCTCGTCTCATCTGTTGCATTCATTTCCCGAGATCATCGTAGAGCCCACGACCGTCCGATCGATGTCGTTCGTCGGGACCCACGAGTACTTAGCACCCGAGATCGTACGAGGAGATGGGCATGGAAGTGCCGTGGATTGGTGGACTTTTGGAATCTTCTTGTATGAATTGTTGCATGGGAAAACACCATTCAAAGGGAATGGAAACAGAGAGACACTATGCAATGTGGCTAATAAAGGGTTGAAGTTTCCAGAAGGTTCTGATCATCAGCATCATAATCATAACGTAAGTTTTGCTGCTAAGGATTTGATTAGAGGTTTGCTTGTGAAGGATCCTAAGAAGAGATTGGGGTTTAAGAGAGGAGCTGTAGAGATTAAGCAGCATGCTTTCTTTCAAGGTGTTAATTGGCCCTTAATTAGAACCACTAATCCTCCACATATTCCTAAGCCTCTTGATATTTCAATTTTTAACCCAAATTTGAATCCATCTGCTAATGCTCATGTTTCAAGGAGTGAGCACAAGAGTGCTGCTAATAGCTCTCATAGTCATAGTCGTAGTCATAGTCATAGCTCATCTGGGTCTTACTTAGATTTTGAGTTTTTCTAA 1650 42.67 MENPPPPPSPLQDMAQNNDMVEKSFKQSVSIMSTISGPSVSVSSMNSNGSSTSASALTLHEPYKHDVSGEKSSSSTSDDLDSNETISRTSFCPSKPHKGNDMRWELIQKLKMKDGDLRLAHFRLLKKLGCGDIGSVYLAELRGTGCLFAMKVMDKGMLVGRKKLLRAQTERDILGLLDHPFLPTLYSHFETDKFSCLLMEFCNGGDLHTLRQHQPGKYFLEQATRFYGSQVLVALEYLHMMGVIYRDLKPENVLVRDDGHIMLSDFDLSLRCFVNPTLVHQSTPRSTTGPTSGETSYCIQPSCIALDSSCKLPLHCVQPSCFTPHFLVNTSKKSTKKRHDHRPSGSGSSSSHLLHSFPEIIVEPTTVRSMSFVGTHEYLAPEIVRGDGHGSAVDWWTFGIFLYELLHGKTPFKGNGNRETLCNVANKGLKFPEGSDHQHHNHNVSFAAKDLIRGLLVKDPKKRLGFKRGAVEIKQHAFFQGVNWPLIRTTNPPHIPKPLDISIFNPNLNPSANAHVSRSEHKSAANSSHSHSRSHSHSSSGSYLDFEFF 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9214546 9216270 + Conep16aG0325400.1 Cone16ag0885 455319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0885 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0885 549 CDD STKc_phototropin_like 121 501 - -
Cone16ag0885 549 MobiDBLite consensus disorder prediction 332 352 - -
Cone16ag0885 549 MobiDBLite consensus disorder prediction 1 21 - -
Cone16ag0885 549 FunFam Serine/threonine-protein kinase OXI1 206 273 - -
Cone16ag0885 549 Gene3D Transferase(Phosphotransferase) domain 1 202 271 - -
Cone16ag0885 549 ProSiteProfiles Protein kinase domain profile. 122 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0885 549 SMART serkin_6 122 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0885 549 MobiDBLite consensus disorder prediction 73 94 - -
Cone16ag0885 549 Pfam Protein kinase domain 123 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0885 549 Pfam Protein kinase domain 369 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0885 549 FunFam Serine/threonine-protein kinase D6PK-like 120 205 - -
Cone16ag0885 549 PANTHER FLIPPASE KINASE 1-RELATED 43 521 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone16ag0885 549 FunFam serine/threonine-protein kinase D6PK-like 367 497 - -
Cone16ag0885 549 MobiDBLite consensus disorder prediction 36 55 - -
Cone16ag0885 549 SUPERFAMILY Protein kinase-like (PK-like) 100 507 IPR011009 -
Cone16ag0885 549 MobiDBLite consensus disorder prediction 64 96 - -
Cone16ag0885 549 MobiDBLite consensus disorder prediction 512 541 - -
Cone16ag0885 549 Gene3D Phosphorylase Kinase; domain 1 120 201 - -
Cone16ag0885 549 Gene3D Transferase(Phosphotransferase) domain 1 368 497 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0885 Cone-Chr16:9214546 Cone5ag1793 Cone-Chr5:12725115 1.79E-185 dispersed
Cone16ag0885 Cone-Chr16:9214546 Cone2ag0168 Cone-Chr2:895285 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82229 PF07714 PK_Tyr_Ser-Thr 2.40E-09 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0885 K08286 - rcu:8275994 624.009