Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0887 ATGAGGAAATCCAGCTTTTTCTTCATTTGGGTCAATCTGTTGCTTCTACTTCTTCTATCTTCATCTTTACTACTTGCAGAAGACGACGTCAAATGCCTTCAAGGCATAAAAAATTCACTAACCGATCCTCAAACGAAACTAAGCTCATGGAAATTCGCCAACAAGTCCGTCGGTTTCATCTGCAACTTCGTCGGCGTTTCCTGCTGGAACAGCCGTGAAAATCGCATAATCAGCCTCGAACTACGAGACATGAAGCTTTCCGGCAAAGTTCCGGCCGACCTCCAATACTGTTCCAGCCTCCAAAACCTCGATTTTTCTGACAACAGTCTCTCCGGCTCAATCCCCGCCGATTTGTGCAAATGGGTTCCTTTTTTGGTAACTTTAGATTTATCAAACAACGATTTTTCAGGTCCTATACCTGTTAACCTCTCAAAATGTTCATACTTGAACAAATTGGTTTTGTCTAATAATAAGCTTTCTGGGCCTATTCCGTCTGAAATTTCTAATCTGAATAGGCTCAGTAAGTTCTCTGTTGATAATAATGAACTTAGTGGAACTATTCCTTCATCTTTTGGTAAATTTGATAAGGCTGATTTTGAAGGGAATAAGGGGCTTTGTGGGGGCCCACTTGGATCAAACTGCGGCAAGTTGAGTAAGAAAAGCCTTTCAATTATCATCTCAGCTGGTGTTATGGGTGCTGCTGTTTCCTTGTTGGCAGCGTTTGGGTTGTTTTGGAGGTATCATATGAAACAAAGTGAGAAGAGGAAGAAAAGAGGATATGGATTTGGAGACGCACAAGAAGCCGAATGGGCCGAGAAATTGAGGTCTCATAAACTCGTTCAAGTTACATTGTTTCAAAAGCCTATAGTGAAACTTAAACTGTCCAATTTGATGGCTTCCACGAACAACTTCAATCCCGAAAACATAATCGTTTCGACTCGAACGGGAACAACTTATAAGGCGGTTCTGCAAGACGGGTCTTCACTGGCTATAAAACGGCTTAATAATTGTAAGCTAGGCGAGAAGCAATTTTGGGCCGAAATGAACCTATTAGGACAACTTAGAAGGCCTAATCTAGCACCCCTTTTAGGATTTTGTATCATAGAAGATGAAAAGCTCTTGGTATATAAGTACATGTCAAATGGGACTTTGTATTCTTTGTTACATGGAAATGGGGAGAGGTTGGATTGGGAGACTAGGTTTAAGATCGGACTAGGCGCGGCTAAGGGTCTTGCTTGGCTTCACCATGAATGCAAACCACCCTTGATGCATCAAAATATATGCTCTAATGTGATACTTGTAGATGAAGATTTTGATGCTAGGATAATAGATTGTGGGTTAGCTAATTTGATGAAGAATGACTCAAATGGGAGCTTTGTTAATGGGGATTTAGGAGAACTTGGATACATTGCGCCGGAATATTCGACCACTATGGTTGCCTCATTGAAAGGTGATGTTTACGGATTAGGGGTCGTGCTTTTGGAGTTAGTAACGGGCCAGAAGCCACTTGAGATTGACCAAACGGAGGAGGAGTATAACGGGAAGAATTTGGTGGATTGGGTTAATTTGTTAAGTGGGAGTGGTAGAGCGAAAGATGTTATTGATAAAGTGCTTTGTGGGAAGGGAAATGATGAGGAGATTTTTGAGTTCATGAAGATTGCTTGTAATTGTGTTCTTCCTCGACCGAAGGAGAGGTGGTCTATGTACCGGGTTCATCGGGCATTGAAGAGTTTGAGTTCGGGCCGGAATTGGGCAGAACCGGATGATGACTTTTTTCTTGTGGAGGGAGGGGAAGATGGATGGCGGTTTGATTTAGCTTTTTGA 1824 42.16 MRKSSFFFIWVNLLLLLLLSSSLLLAEDDVKCLQGIKNSLTDPQTKLSSWKFANKSVGFICNFVGVSCWNSRENRIISLELRDMKLSGKVPADLQYCSSLQNLDFSDNSLSGSIPADLCKWVPFLVTLDLSNNDFSGPIPVNLSKCSYLNKLVLSNNKLSGPIPSEISNLNRLSKFSVDNNELSGTIPSSFGKFDKADFEGNKGLCGGPLGSNCGKLSKKSLSIIISAGVMGAAVSLLAAFGLFWRYHMKQSEKRKKRGYGFGDAQEAEWAEKLRSHKLVQVTLFQKPIVKLKLSNLMASTNNFNPENIIVSTRTGTTYKAVLQDGSSLAIKRLNNCKLGEKQFWAEMNLLGQLRRPNLAPLLGFCIIEDEKLLVYKYMSNGTLYSLLHGNGERLDWETRFKIGLGAAKGLAWLHHECKPPLMHQNICSNVILVDEDFDARIIDCGLANLMKNDSNGSFVNGDLGELGYIAPEYSTTMVASLKGDVYGLGVVLLELVTGQKPLEIDQTEEEYNGKNLVDWVNLLSGSGRAKDVIDKVLCGKGNDEEIFEFMKIACNCVLPRPKERWSMYRVHRALKSLSSGRNWAEPDDDFFLVEGGEDGWRFDLAF 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9226861 9228686 - Conep16aG0325600.1 Cone16ag0887 455321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0887 607 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 379 587 - -
Cone16ag0887 607 Pfam Protein tyrosine and serine/threonine kinase 316 524 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0887 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 26 215 - -
Cone16ag0887 607 Gene3D Ribonuclease Inhibitor 26 216 IPR032675 -
Cone16ag0887 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 265 378 - -
Cone16ag0887 607 SUPERFAMILY L domain-like 27 211 - -
Cone16ag0887 607 PANTHER RECEPTOR-LIKE PROTEIN 55 44 575 - -
Cone16ag0887 607 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Cone16ag0887 607 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Cone16ag0887 607 Pfam Leucine Rich Repeat 173 193 IPR001611 GO:0005515(InterPro)
Cone16ag0887 607 Pfam Leucine Rich Repeat 125 146 IPR001611 GO:0005515(InterPro)
Cone16ag0887 607 Pfam Leucine Rich Repeat 149 170 IPR001611 GO:0005515(InterPro)
Cone16ag0887 607 Gene3D Transferase(Phosphotransferase) domain 1 379 590 - -
Cone16ag0887 607 SUPERFAMILY Protein kinase-like (PK-like) 280 575 IPR011009 -
Cone16ag0887 607 ProSiteProfiles Protein kinase domain profile. 304 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0887 607 Gene3D Phosphorylase Kinase; domain 1 264 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0141 Cone-Chr11:632792 Cone16ag0887 Cone-Chr16:9226861 1.78E-239 dispersed
Cone16ag0887 Cone-Chr16:9226861 Cone3ag0598 Cone-Chr3:2962451 2.75E-131 dispersed
Cone13ag1003 Cone-Chr13:8424072 Cone16ag0887 Cone-Chr16:9226861 2.63E-203 wgd
Cone16ag0887 Cone-Chr16:9226861 Cone18ag1340 Cone-Chr18:9262250 5.24E-246 wgd
Cone16ag0887 Cone-Chr16:9226861 Cone19ag0996 Cone-Chr19:7471069 9.62E-210 wgd
Cone16ag0887 Cone-Chr16:9226861 Cone2ag0165 Cone-Chr2:885313 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82230 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0887 - - - 0.0