Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0900 ATGGAGTTTCAAGAGGGTTTAATGAAATTGATGATTCAGAAAAATGGTGAAGCAAAAAAAATTTCAGAGCTGATTACAAGCAGTCCAAAGCGAATATGGAGATTCTTCCACAGATCATCTTCAACAATTCCGTCTAGTCCTCTTAAAAATCAGACTCCAGAAGAGTTCATCTGCCCAATTTCTCGGTCTTTAATGGCGGAACCAGTTATCGTCACCTCTGGACAAACATTCGAAGCTGCATGCGTTCAGGTATGCAAAAGTCTAAGCTTTATTCCAGTTCTCATAGACGGCTCCTCACCTGATTTCTCCTCCGTAATCCCAAATCGCGCCCTAAAATCCACCATTTTCAACTGGTGCAAGAACTCCTCCATCGATTTTCCCAAACCGCTTGATTTCACATCCGCCGAGAAGCTCGTCCGTACATCAATGTATTCGCAGAAGCAAAACCCCAACACTCGTAACAGAACCGACAAGGAATTGATTCAAGGAGTTGCAGAAAATCCTCATATATATTTCAACCACGCCGCCACAGAGGTAACTCGCCGCCGGCCAGCTCACTTCTACTCATCGAGCTCGGAAGAATCGGTTAACGCAAAAGAGTCGTCGTCTACTCCACCGCTTCCGTTAAAAACTCGTCCGAGCTGTTACTCCTCCCCTTCTTCTTCCTCCTCCGAAAGCGAAACCCTAAACCCTAACTTGCCTGAAGAAGAAGAGATTTTCACTAAACTCAGAAGCACACAAGTTTACGATGTAGAAGAAGCCGTGATCTCTCTAAGAAACATCACACGGACCAGAGAAGGCCTACGAGCCCACCTCTGCACCCCTCGTTTGCTCTCCGCCCTACGATCACTCATCGTCTCGAGATACGCTGCCATTCAGGTGAACTCTGTTGCAGCTTTAGTGAACCTCTCTCTGGAGAAACACAACAAGGTGAAGATCGTACGGTCAGGAATCCTTCCTAATCTAATCGACATTTTGAGGTGCGGATCCTCTGAGGTGCAGGAACATGCTTCTGGTGCACTCTTCAGCTTGGCCCTTGATGATAACAACAAGGCTGCGATCGGTGTACTAGGTGCATTACCGCCACTAATCCGAATGCTCCGGTCTGAAAACGAGCGGGCCCGGCATGACTCGGCTCTTGCCCTATACCACCTTTCACTGGTCCAAAGCAACCGGTCCAAGCTCATTAAAGTCGGGTCTGTCCCAGCATTGTTAACCATGGTGAACTCCGGTCATATGACGAGTCTGGTCCTACTTATACTATGCAATTTGGCTTCATGTGGGGATGGGCGGGCTGTGTTGATGGACTCAGGTGCGGTCGAGTGTATGGTGGAGAAGCTAAGGGGGGATGATTTGAGTTGTGAGTCAGCTCGGGAGAGCTGCATTGTGGTTCTATACGGGCTGAGCCAGGGTGGGTTGAGGTTCAAGGGTTTGGCTAAGGCGGTCGGGTTGGTGGAGGTGTTAATGAAGGTGGAGAAAATGGGGAGCAAGAGGGCAAGAGAGAAAGCGAGGAGGATAAATGAGGTTATGAAAGGGAGGGTGGAGGAGGAAGAGGAGGATGTGGATTGGGAGGAGTTGCTAGAATCAGGGTTTGGAGGTCGGAGTCGGCTCGGTGGCGAGTTGGATGGGCTAACTCATCCCAATTTTGAGTACAGTGCTTGCTTTGGAGTTTCTTTTGCCATTCTTTTTCTGGGACCTTTTTTTGCTTTACATAATGTAATTGGGTGTGAATATTTCTTTTTTCCTTTCTTTTTCTTCTCTCAAATGTTTAAACGTGCTATTTTGATGACTTAA 1794 47.6 MEFQEGLMKLMIQKNGEAKKISELITSSPKRIWRFFHRSSSTIPSSPLKNQTPEEFICPISRSLMAEPVIVTSGQTFEAACVQVCKSLSFIPVLIDGSSPDFSSVIPNRALKSTIFNWCKNSSIDFPKPLDFTSAEKLVRTSMYSQKQNPNTRNRTDKELIQGVAENPHIYFNHAATEVTRRRPAHFYSSSSEESVNAKESSSTPPLPLKTRPSCYSSPSSSSSESETLNPNLPEEEEIFTKLRSTQVYDVEEAVISLRNITRTREGLRAHLCTPRLLSALRSLIVSRYAAIQVNSVAALVNLSLEKHNKVKIVRSGILPNLIDILRCGSSEVQEHASGALFSLALDDNNKAAIGVLGALPPLIRMLRSENERARHDSALALYHLSLVQSNRSKLIKVGSVPALLTMVNSGHMTSLVLLILCNLASCGDGRAVLMDSGAVECMVEKLRGDDLSCESARESCIVVLYGLSQGGLRFKGLAKAVGLVEVLMKVEKMGSKRAREKARRINEVMKGRVEEEEEDVDWEELLESGFGGRSRLGGELDGLTHPNFEYSACFGVSFAILFLGPFFALHNVIGCEYFFFPFFFFSQMFKRAILMT 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9344124 9345917 + Conep16aG0326900.1 Cone16ag0900 455334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0900 597 ProSiteProfiles U-box domain profile. 51 125 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone16ag0900 597 SMART arm_5 264 305 IPR000225 GO:0005515(InterPro)
Cone16ag0900 597 SMART arm_5 427 470 IPR000225 GO:0005515(InterPro)
Cone16ag0900 597 SMART arm_5 347 387 IPR000225 GO:0005515(InterPro)
Cone16ag0900 597 SMART arm_5 306 346 IPR000225 GO:0005515(InterPro)
Cone16ag0900 597 SMART arm_5 388 426 IPR000225 GO:0005515(InterPro)
Cone16ag0900 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 124 IPR013083 -
Cone16ag0900 597 PANTHER U BOX DOMAIN-CONTAINING 34 511 - -
Cone16ag0900 597 MobiDBLite consensus disorder prediction 185 233 - -
Cone16ag0900 597 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 354 IPR000225 GO:0005515(InterPro)
Cone16ag0900 597 Coils Coil 500 520 - -
Cone16ag0900 597 SUPERFAMILY RING/U-box 47 129 - -
Cone16ag0900 597 MobiDBLite consensus disorder prediction 185 230 - -
Cone16ag0900 597 Pfam Armadillo/beta-catenin-like repeat 308 345 IPR000225 GO:0005515(InterPro)
Cone16ag0900 597 Pfam Armadillo/beta-catenin-like repeat 347 386 IPR000225 GO:0005515(InterPro)
Cone16ag0900 597 SUPERFAMILY ARM repeat 238 491 IPR016024 -
Cone16ag0900 597 SMART Ubox_2 55 118 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone16ag0900 597 FunFam RING-type E3 ubiquitin transferase 234 510 - -
Cone16ag0900 597 Gene3D - 236 506 IPR011989 -
Cone16ag0900 597 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 358 400 IPR000225 GO:0005515(InterPro)
Cone16ag0900 597 Pfam U-box domain 53 122 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0900 Cone-Chr16:9344124 Cone19ag0122 Cone-Chr19:685798 6.63E-85 dispersed
Cone16ag0127 Cone-Chr16:718916 Cone16ag0900 Cone-Chr16:9344124 1.79E-101 wgd
Cone16ag0900 Cone-Chr16:9344124 Cone2ag0881 Cone-Chr2:34729517 1.18E-114 wgd
Cone16ag0900 Cone-Chr16:9344124 Cone2ag0153 Cone-Chr2:794797 2.54E-280 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0900 - - - 0.0