Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0905 ATGCCTCCAAACTCAGTTTCAATCACAATTGACAACCCCAAAAACTTGCCTCTTGTAGAAATCAATGCCAATCCAGATTCATCATCATCATTACTGCCTGAAAAGCAGAAGAAATCAGTGAATCCCAAGCAATTCACTTGGGTTCTCCTCCTAAAAGCTCATAGAGCTGTAACTTCATTTTCATGGCTGCCCATGGCTGCCAAATCCATGTTCCTTTCACTTAGACAAAGAATCTCCTTATCCAACTTGAGTCAAGAACAAGAAGATCCAATTGGAAGAGGCAAATTGTACAAGTTCATCAAAATCTTCCTGGCCATGTCAATATTAGCTCTGATAGTTGAAGTGATTGCACATTTCAAGAAGTGGAATTTGGCTCAAGTTCATCAAGGTCTTGTTCAATGGATTTATATAAACTGGTTGGATTTTAGAGTTGACTATGTTGCTCCTTTTGTCATCATGCTTTCGAAATTCTGCATTGTGTTGTTCTTGATCCAATCGGTCGATCGCCTTGTTCTCTGTCTTGGGTGTTTTTGGATCAAGTACAAGAAATTAAAGCCCACCATTACAGAAGACAGTGCTTATGACATGAAAGCTCCTTTGAGTTTTCCCATGGTCCTTGTTCAAATTCCAATGTGCAATGAAAGAGAGGTGTATGAGCAATCTATTGCTGCAGCATGTGAGCTAGATTGGCCGAGAAACCGGATATTGATTCAAGTTCTAGACGATTCGGACGATGAGAATCTTAAGGCTCTGATAAGGAATGAAGTTTTGTCATGGAATGAAAAGGGTGTCAATATAATCTACAGACATAGAGTTATAAGGACCGGTTATAAAGCTGGAAATCTCAAATCGGCAATGGGATGTGACTATGTCAAGGACTATGAATTTGTTGCTATCCTCGATGCAGATTTCCAGCCTAATCCCGATTTCCTTAAACAAACCATTCCTTACTTCAAGGGAAATCCTGAACTGGGTCTTGTTCAAGCAAGATGGAGCTTTGTGAACAGGGATGGGAATTTACTTACAAGGCTCCAAAACATCAATCTATGTTTCCATTTTGAAGTGGAGCAGCAAGTCAATGGGATGCTCCTCAATTTCTTCGGATTCAATGGGACGGCAGGTGTTTGGAGGATCAAGGCCTTGGAAGAATCCGGTGGGTGGCTCGAAAGAACGACAGTTGAAGACATGGATATTGCAGTTAGAGCTCACTTGAATGGATGGAAATTCATCTACCTTAATGATGTTAAGGTGCTTTGCGAACTGCCTGAATCCTATGAAGCATATAAGAAACAACAACATCGATGGCACTCCGGTCCCATGCAGCTGTTCCGGTTATGTCTCCCTTCTATCATATCTTCAAAGATATCGGCATGGAAGAAAGCAAACTTGATATTTCTCTTCTTCCTTCTAAGAAAACTCATTCTACCCTTTTACTCATTCACATTGTTTTGCATTATACTGCCATTGACTATGTTCATCCCTGAGGCGGAACTTCCTCTGTGGGTAATATGCTACATTCCGGTTTTCCTGTCGTTCTTGAACATCCTACCTTCCCCGAAATCATTCCCGTTCTTAATCCCTTACCTTCTATTCGAAAACACTATGTCGGTTACAAAATTCAATGCGATGGTTTCTGGGTTGTTTCAGCTAGGAAGTGCATATGAATGGGTAGTGACAAAGAAAACCGGAAGATCATCCGAATCAGACTTACTAGCATTTGCGGAAAGAGAAACGAAATCTTCAAACGACCAAGAGAAGATACATAGAAGGCATTCCGAATCGGGATTGGAACTGTTGAATAAGATCAAGCAACAAGAAGAAGTTCCTTTTTTGAAGAAGAAGAAGAAGAAGAAGAAGAGGAATATGCTTTATAGAAAAGAGCTTGCTCTTGCTTTTCTTTTGCTAACTGCAGCTGGTAGAAGTCTTTTATCTGCACAGGGGGTTCATTTCTATTTCTTGCTTTTTCAAGGGCTGTCTTTTCTTGTTGTTGGGTTGGACTTGATTGGTGAGCAGATAAGCTGA 2022 40.6 MPPNSVSITIDNPKNLPLVEINANPDSSSSLLPEKQKKSVNPKQFTWVLLLKAHRAVTSFSWLPMAAKSMFLSLRQRISLSNLSQEQEDPIGRGKLYKFIKIFLAMSILALIVEVIAHFKKWNLAQVHQGLVQWIYINWLDFRVDYVAPFVIMLSKFCIVLFLIQSVDRLVLCLGCFWIKYKKLKPTITEDSAYDMKAPLSFPMVLVQIPMCNEREVYEQSIAAACELDWPRNRILIQVLDDSDDENLKALIRNEVLSWNEKGVNIIYRHRVIRTGYKAGNLKSAMGCDYVKDYEFVAILDADFQPNPDFLKQTIPYFKGNPELGLVQARWSFVNRDGNLLTRLQNINLCFHFEVEQQVNGMLLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIISSKISAWKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFLSFLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKTGRSSESDLLAFAERETKSSNDQEKIHRRHSESGLELLNKIKQQEEVPFLKKKKKKKKRNMLYRKELALAFLLLTAAGRSLLSAQGVHFYFLLFQGLSFLVVGLDLIGEQIS 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9361254 9364032 - Conep16aG0327400.1 Cone16ag0905 455339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0905 673 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 195 422 IPR029044 -
Cone16ag0905 673 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 126 671 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cone16ag0905 673 SUPERFAMILY Nucleotide-diphospho-sugar transferases 205 505 IPR029044 -
Cone16ag0905 673 FunFam probable xyloglucan glycosyltransferase 5 196 421 - -
Cone16ag0905 673 Pfam Glycosyl transferase family group 2 297 507 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0905 K20887 - - csv:101208151 1052.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0905 Cone-Chr16:9361254 Cone4ag1865 Cone-Chr4:13366518 0 dispersed
Cone16ag0905 Cone-Chr16:9361254 Cone2ag0150 Cone-Chr2:782959 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1130 . 230 396 REM Transcription Factor Family AT1G49480 64.1 1.8e-52 203.4
Cone3ag1121 . 257 400 REM Transcription Factor Family AT1G49480 70.8 4.4e-51 198.7
Cone8ag1166 . 150 358 REM Transcription Factor Family AT1G49480 53.3 1.3e-50 197.2
Cone12ag1121 . 197 358 REM Transcription Factor Family AT1G49480 63.0 2.2e-50 196.4
Cone7ag1772 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.5e-312 1068.9
Cone4ag1865 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.7e-311 1065.4
Cone4ag1635 . 1 704 REM Transcription Factor Family AT2G24630 64.7 7.9e-261 897.1
Cone7ag1317 . 1 702 REM Transcription Factor Family AT2G24630 64.1 6.7e-260 894.0
Cone17ag0903 . 1 713 REM Transcription Factor Family AT2G24630 64.5 1.9e-259 892.5
Cone2ag0150 . 6 671 REM Transcription Factor Family AT2G24630 67.2 2.9e-255 878.6
Cone16ag0905 . 6 673 REM Transcription Factor Family AT2G24630 66.4 3.8e-255 878.2
Cone20ag0246 . 1 682 REM Transcription Factor Family AT2G24630 62.0 1.7e-242 836.3
Cone7ag1772 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.5e-312 1068.9
Cone4ag1865 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.7e-311 1065.4
Cone4ag1635 . 1 704 REM Transcription Factor Family AT2G24630 64.7 7.9e-261 897.1
Cone7ag1317 . 1 702 REM Transcription Factor Family AT2G24630 64.1 6.7e-260 894.0
Cone17ag0903 . 1 713 REM Transcription Factor Family AT2G24630 64.5 1.9e-259 892.5
Cone2ag0150 . 6 671 REM Transcription Factor Family AT2G24630 67.2 2.9e-255 878.6
Cone16ag0905 . 6 673 REM Transcription Factor Family AT2G24630 66.4 3.8e-255 878.2
Cone20ag0246 . 1 682 REM Transcription Factor Family AT2G24630 62.0 1.7e-242 836.3
Cone7ag1772 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.5e-312 1068.9
Cone4ag1865 . 1 702 REM Transcription Factor Family AT2G24630 76.8 1.7e-311 1065.4
Cone4ag1635 . 1 704 REM Transcription Factor Family AT2G24630 64.7 7.9e-261 897.1
Cone7ag1317 . 1 702 REM Transcription Factor Family AT2G24630 64.1 6.7e-260 894.0
Cone17ag0903 . 1 713 REM Transcription Factor Family AT2G24630 64.5 1.9e-259 892.5
Cone2ag0150 . 6 671 REM Transcription Factor Family AT2G24630 67.2 2.9e-255 878.6
Cone16ag0905 . 6 673 REM Transcription Factor Family AT2G24630 66.4 3.8e-255 878.2
Cone20ag0246 . 1 682 REM Transcription Factor Family AT2G24630 62.0 1.7e-242 836.3
Cone10ag1130 . 230 396 REM Transcription Factor Family AT1G49480 64.1 1.8e-52 203.4
Cone3ag1121 . 257 400 REM Transcription Factor Family AT1G49480 70.8 4.4e-51 198.7
Cone8ag1166 . 150 358 REM Transcription Factor Family AT1G49480 53.3 1.3e-50 197.2
Cone12ag1121 . 197 358 REM Transcription Factor Family AT1G49480 63.0 2.2e-50 196.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33