Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0919 ATGGAGTCGGGCCGGTTTTTGTTCGATCACTCTGCTTCTTCCCATGGCAATATGCTCTACCTAGGGAATAGCGATTTCGTTTTTCGAGGAGCAAGAACAATGATGGGCATGGAGGAAAATTCAAAGAGAAGACCATTTTTCAGCTCGCCAGAGGAGCTGTACGACGATGAATATTACGACGAGCAGTTGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTACATCTGCTGGAGAAGAGCTTTGAGGCAGAGAACAAACTGGAGCCAGAGCAAAAGACCCAGTTGGCTAAGAAGCTCAGGTTGCAGCCGAGGCAGGTGGCTGTCTGGTTCCAAAACCGCCGAGCAAGGTGGAAGACTAAGCAGCTCGAGAGAGATTATGATCTCCTCAAATCCTCGTATGACGCTCTTCTTTCCGATTTTGACTCCATTGCGAAAGAAAATGAGAAGCTAAAAAATGAGGTGGTATCCTTGACGGAGAAACTTCAATCTAAAGAGGTGTCCAAAACACCAACTCAACTTACAAAGCTCGAGCCTCATATGGCGGATCTTACTGAAATCCTCACCTTCCAATTGAATGTGAAGGTGGAAGATCGTCTGAGCTCGGGGACAGGTGGAAGTGCAGTATTGGATGAGGATGGTCCACAACTGCTAGACAGTGGCAATTCTTATTTTCCGAACAATGAGTACCCCAACTGTATTATATTGGAGGAAGATGACGGTAGTGATGATGGGCAGGGTTACTTCCCGAATGTTTTCAGTTCATCCGGGCAGGAGAACAACACCGAGGAAGGAGAGCCTTTGGGTTGGTGGGTCTGGTCCTGA 825 48.36 MESGRFLFDHSASSHGNMLYLGNSDFVFRGARTMMGMEENSKRRPFFSSPEELYDDEYYDEQLPEKKRRLTSEQVHLLEKSFEAENKLEPEQKTQLAKKLRLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDALLSDFDSIAKENEKLKNEVVSLTEKLQSKEVSKTPTQLTKLEPHMADLTEILTFQLNVKVEDRLSSGTGGSAVLDEDGPQLLDSGNSYFPNNEYPNCIILEEDDGSDDGQGYFPNVFSSSGQENNTEEGEPLGWWVWS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9435684 9437693 - Conep16aG0328800.1 Cone16ag0919 455353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0919 274 FunFam homeobox-leucine zipper protein ATHB-6-like 69 115 - -
Cone16ag0919 274 SMART HOX_1 64 125 IPR001356 GO:0003677(InterPro)
Cone16ag0919 274 Pfam Homeodomain 66 119 IPR001356 GO:0003677(InterPro)
Cone16ag0919 274 SUPERFAMILY Homeodomain-like 66 132 IPR009057 -
Cone16ag0919 274 CDD homeodomain 66 122 IPR001356 GO:0003677(InterPro)
Cone16ag0919 274 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677(InterPro)
Cone16ag0919 274 Coils Coil 134 168 - -
Cone16ag0919 274 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag0919 274 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 200 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone16ag0919 274 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone16ag0919 274 Gene3D - 60 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0919 Cone-Chr16:9435684 Cone19ag0090 Cone-Chr19:519877 2.29E-33 dispersed
Cone16ag0919 Cone-Chr16:9435684 Cone2ag0135 Cone-Chr2:717434 2.69E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44979 PF00641 zf-RanBP 1.30E-09 CL0167 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0919 K09338 - vvi:100257769 367.851