Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0922 ATGGAACACTTAGTGGATCATATGAGAACCGTGTTTCACTCGAATCATGAACCCACTTGTGGGATTTGCAGGAAGCATTGCAGATCTTTTGAGTCCCTTAGAGAACATCTTATTGGGCCATTACCAAAAGCTGAATGCAAAGAGATATTCAGTGTGAGAGGGTGCAAGTTCTGCCTAGCAATCTTTGATAGCGCTTATTCTGTTAGGGTTCATCAACAAAGAACATGCCAAGTCTCTGCTGGACTCAATCCAGGAATACTCGGCCGCTTGGCGAACTTAGGGATTCGAGACAACCTGATTATAGACAATGGAAGAACAAGAGGGCCAGAGGTGGTTGCATTAGCTTGCAAAATGGTGGGTGGAGGCAACGATGGCTCTTTAGATATCTGTGCAAGAGTTTGCATCATCGATGAAAATGAAAACATCATCTTCCACACTTATGTTAAGCCAACCATCCCTGTCACTAACTATAGGTATGACTCGACCGGAATCCGACCGGAATTCCTAAGGGATGCAATGCCAATGAGGCAAGTGCAAAAGAAGATTCAAGACTTCCTGTGTAATGGTCAACCTTTGTGGCAGATTCGACCTAGAGGTGGAAGAGCAAGGATTCTTGTGGGCCATGGTTTAGATCATGACCTTGATCGCTTGCAAATTGAATATCCATCTGTAATGTTCAGGGATACTGCAAGATATCCTCCATTGATGAAAACAAGCAAACTCAGCAACTCACTCAAGTATCTATCACAAGTATATCTTGGGTTTGAGATTCAAAATGGGATACAAGATCCATATGAAGATTGTGTTGCAAGCATGAAGCTGTACATGAGAATGAGATCACAAGTTCATAGGATAGAGGACTACCCATTGGCTTCTGACCCACAAAACAAGAATAGCTTTGCAACATGGAGGCAAAGTGAGCTTGAGAGAATGACATCAGAACAAATGTTGGAGATCTCTAGGTCTGATTACTACTGTTGGTGCTTGGATAATTAA 996 42.67 MEHLVDHMRTVFHSNHEPTCGICRKHCRSFESLREHLIGPLPKAECKEIFSVRGCKFCLAIFDSAYSVRVHQQRTCQVSAGLNPGILGRLANLGIRDNLIIDNGRTRGPEVVALACKMVGGGNDGSLDICARVCIIDENENIIFHTYVKPTIPVTNYRYDSTGIRPEFLRDAMPMRQVQKKIQDFLCNGQPLWQIRPRGGRARILVGHGLDHDLDRLQIEYPSVMFRDTARYPPLMKTSKLSNSLKYLSQVYLGFEIQNGIQDPYEDCVASMKLYMRMRSQVHRIEDYPLASDPQNKNSFATWRQSELERMTSEQMLEISRSDYYCWCLDN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9456870 9458398 - Conep16aG0329100.1 Cone16ag0922 455356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0922 331 SUPERFAMILY Ribonuclease H-like 124 279 IPR012337 -
Cone16ag0922 331 Pfam Exonuclease 127 275 IPR013520 -
Cone16ag0922 331 Gene3D - 108 290 IPR036397 GO:0003676(InterPro)
Cone16ag0922 331 SMART exoiiiendus 110 284 IPR013520 -
Cone16ag0922 331 FunFam RNA exonuclease 4 107 294 - -
Cone16ag0922 331 CDD REX4_like 112 275 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Cone16ag0922 331 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 331 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0922 Cone-Chr16:9456870 Cone9ag1345 Cone-Chr9:10083669 7.09E-11 dispersed
Cone16ag0922 Cone-Chr16:9456870 Cone2ag0133 Cone-Chr2:698572 8.20E-238 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0922 - - - 0.0