Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0935 ATGGAAGCCTTGTCAAAACAAATCACCACCCAAAAATGGGCAACGAATTTCATCAACGCGGACAGTCCGATGTACGGCCTGGCACAATGCTTCGACGATCTCACTCAAACCGACTGCATTGCCTGCTACGCCGCGATCCGCACCAATCTCCCTGTTTGCCTTACCTCCATCTCCGCCCGAATCTATCTCGATGGATGCTTCGCCCGCTACGACAATTACAGTTTCTATTCAGAGTCTACAAGTTCCTCAAAAGATTCTCTCAATTGCAGCTCAAATTTAGGACAAATCGTCGATGAAACCGATAAATCAAACTTTGTCACGAATTTGGGGCTTGTGGTTGATAACGTGACACGAAAAGCGGTCGCGAGTGGCGGTTTTGGAACCGGAGAAGTTAACGGAGTATTTGCTTTAGGTCAGTGCTGGAAACTTGTAGGGACAGCAGAGTGCAAAGTTTGTTTGGAGAAGGCAAGCGAGAAAGTGAAAGACTGTAGTCCGAAAAGAGAAGGGAGAGCTTTAAACGTCGGATGCTATTTGAGGTATTCTACTGTCAAGTTTTATGATGATAATAATGAAGAAGATGATTCACATCATGGAATTTCACAAAAAATCAAAGCGACCATTATTTCGGTTTCAGCTGCATTCTTAATCCTCTCTTCCCTTGCCATTTATGCTGCCTACACAAAATTATCAGATATGAGAAAAGAGCACAATAAGCACAGGCCGCTTTCAATCTCCATGAGAAAATCCGGTCTTGACTTTAAATATGAGACGCTAGAAAGGGCGACGGATTATTTTAGTCCTTCGAGAAAAATAGGCGAAGGAGGAGCTAGTTCTGTATTTAAAGGTACTCTTTCGAATGGGAAAACCGTAGCTGTTAAGAGATTGATTTACAACACAAGGCAATGGGTTGATGAATTCTTCAACGAGGTGAATTTGGTAAGCGGAATTCAACACAAGAATCTCGTGAAACTTCTCGGTTGCAGCATTGAAGGCCCGGAAAGCCTCCTTGTTTTTGAATATTTTCCTAATGGAAGCCTTGATCAATACATATTTGATAAGAACAGAATTCAGATTCTAAATTGGAAACAGAGGCTTAATATTATTATAGGCACAGCGGAAGGGCTTGCACACCTTCATGAAGGTTGTGAAATAAGAATCATCCATAGAGATATCAAAAGCAGCAATGTTCTTCTTGATGAGAATCTGTCTCCAAAAATTTCCGACTTTGGCCTTGCTCGGTGCTTAGCTGCCGATAAGTCTCATTTAAGCACTGGACTCGCCGGAACATTAGGTTATATGGCTCCTGAATATGTCATTCAAGGACAACTCACCGAAAAAGCCGATGTTTACAGTTTCGGGGTTCTGGTTCTCGAGATTCTAACTGGTCGGAAAAACACTGCCTTTGTAGACGACTCGAGCTCTCTTCTAAAAACAGTATGGAAACTCTACAAATCCTATAAATTGATTGAAGCTATTGATCCGTCCTTAAGAGATGATTTTCTGGGGAATGACGAGGTATCACATATACTTCAAATCGGACTTTTATGCACACAAGCCGTACCTAGTTCAAGGCCATCTATGGTTCGTGTTGTTCAAATGCTAAAAGATAAAGAAAATCCAATTTCCGTACCAAGTAAACCTCCTTTTCTAAATGCCGGTATGGTTGAGCCGGGAAGCTACGAAAGATCTTACGGGATTTCCAGCATACTTTCCAATGCACGTCAAAAGCTTCAAGCTCCAAACACCAGCTCTTCAGATTTCTCCGTAGAATCTTCCAATCAAAACTCAACGTAG 1794 42.08 MEALSKQITTQKWATNFINADSPMYGLAQCFDDLTQTDCIACYAAIRTNLPVCLTSISARIYLDGCFARYDNYSFYSESTSSSKDSLNCSSNLGQIVDETDKSNFVTNLGLVVDNVTRKAVASGGFGTGEVNGVFALGQCWKLVGTAECKVCLEKASEKVKDCSPKREGRALNVGCYLRYSTVKFYDDNNEEDDSHHGISQKIKATIISVSAAFLILSSLAIYAAYTKLSDMRKEHNKHRPLSISMRKSGLDFKYETLERATDYFSPSRKIGEGGASSVFKGTLSNGKTVAVKRLIYNTRQWVDEFFNEVNLVSGIQHKNLVKLLGCSIEGPESLLVFEYFPNGSLDQYIFDKNRIQILNWKQRLNIIIGTAEGLAHLHEGCEIRIIHRDIKSSNVLLDENLSPKISDFGLARCLAADKSHLSTGLAGTLGYMAPEYVIQGQLTEKADVYSFGVLVLEILTGRKNTAFVDDSSSLLKTVWKLYKSYKLIEAIDPSLRDDFLGNDEVSHILQIGLLCTQAVPSSRPSMVRVVQMLKDKENPISVPSKPPFLNAGMVEPGSYERSYGISSILSNARQKLQAPNTSSSDFSVESSNQNST 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9517690 9520214 + Conep16aG0330500.1 Cone16ag0935 455369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0935 597 Gene3D Phosphorylase Kinase; domain 1 225 340 - -
Cone16ag0935 597 CDD STKc_IRAK 271 535 - -
Cone16ag0935 597 Pfam Salt stress response/antifungal 89 182 IPR002902 -
Cone16ag0935 597 Pfam Salt stress response/antifungal 12 73 IPR002902 -
Cone16ag0935 597 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 116 566 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone16ag0935 597 FunFam Cysteine-rich receptor-like protein kinase 2 341 542 - -
Cone16ag0935 597 Gene3D - 88 185 IPR038408 -
Cone16ag0935 597 Gene3D - 1 75 IPR038408 -
Cone16ag0935 597 ProSiteProfiles Gnk2-homologous domain profile. 1 75 IPR002902 -
Cone16ag0935 597 SMART serkin_6 265 542 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0935 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0935 597 FunFam Cysteine-rich receptor-like protein kinase 3 88 185 - -
Cone16ag0935 597 MobiDBLite consensus disorder prediction 577 597 - -
Cone16ag0935 597 FunFam Cysteine-rich receptor-like protein kinase 2 232 340 - -
Cone16ag0935 597 SUPERFAMILY Protein kinase-like (PK-like) 242 534 IPR011009 -
Cone16ag0935 597 ProSiteProfiles Protein kinase domain profile. 265 550 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0935 597 Gene3D Transferase(Phosphotransferase) domain 1 341 543 - -
Cone16ag0935 597 Pfam Protein kinase domain 267 532 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0935 597 ProSiteProfiles Gnk2-homologous domain profile. 87 185 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0935 Cone-Chr16:9517690 Cone8ag0680 Cone-Chr8:6804886 6.34E-157 dispersed
Cone11ag0105 Cone-Chr11:455161 Cone16ag0935 Cone-Chr16:9517690 2.86E-114 wgd
Cone13ag0150 Cone-Chr13:946347 Cone16ag0935 Cone-Chr16:9517690 5.89E-191 wgd
Cone16ag0935 Cone-Chr16:9517690 Cone2ag0112 Cone-Chr2:550324 0 wgd
Cone16ag0935 Cone-Chr16:9517690 Cone8ag0679 Cone-Chr8:6769285 1.23E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82231 PF00155 Aminotran_1_2 1.40E-51 CL0061 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0935 - - - 0.0