Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0939 ATGGCTTCTTCAAGCTACTCCAATTCACCATGTGCAGCCTGCAAATTCTTGAGGCGAAAATGCTTACCCGACTGCATATTCGCCCCGTATTTCCCGCCCGAAGAGCCGCAGAAATTCGCAAACGTACACAAGATATTCGGAGCAAGCAATGTAAGCAAGCTATTGAACGAAGTGCAGCCTCATCAGAGAGAAGACGCAGTGAATTCCTTAGCCTATGAGGCAGAAGCTAGAATGAAGGATCCAGTTTACGGCTGCGTAGGAGCCATTTCTGTGCTGCAAAGACAAGTGATTAGGCTTCAAAAGGAGCTAGATGATACGAATGAGGATTTGATTAGGTATGCAGCTTGTAGTGAGCACAATCCAATGTCAAGTAGTAATAGTGCTAATTCTCAGTTTGCAAGAAGGGCAGCTATGGGATTTCATGGTCAACATAGTAATTCGTCAAGTCTCTATTTCAATACTTCTCCATGGAATGATAATGGGCCAGGTTGGGGAGATAGAAGCCATGATAAATGA 516 44.38 MASSSYSNSPCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDDTNEDLIRYAACSEHNPMSSSNSANSQFARRAAMGFHGQHSNSSSLYFNTSPWNDNGPGWGDRSHDK 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9541773 9542288 - Conep16aG0330900.1 Cone16ag0939 455373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0939 171 Coils Coil 89 109 - -
Cone16ag0939 171 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cone16ag0939 171 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cone16ag0939 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0081 Cone-Chr16:414323 Cone16ag0939 Cone-Chr16:9541773 1.12E-70 dispersed
Cone16ag0939 Cone-Chr16:9541773 Cone1ag0847 Cone-Chr1:54241388 2.84E-57 dispersed
Cone13ag0160 Cone-Chr13:1004955 Cone16ag0939 Cone-Chr16:9541773 2.06E-63 wgd
Cone16ag0939 Cone-Chr16:9541773 Cone19ag0159 Cone-Chr19:905693 1.47E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44980 PF04053 Coatomer_WDAD 1.30E-162 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0939 - - - 0.0