Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone16ag0939 | ATGGCTTCTTCAAGCTACTCCAATTCACCATGTGCAGCCTGCAAATTCTTGAGGCGAAAATGCTTACCCGACTGCATATTCGCCCCGTATTTCCCGCCCGAAGAGCCGCAGAAATTCGCAAACGTACACAAGATATTCGGAGCAAGCAATGTAAGCAAGCTATTGAACGAAGTGCAGCCTCATCAGAGAGAAGACGCAGTGAATTCCTTAGCCTATGAGGCAGAAGCTAGAATGAAGGATCCAGTTTACGGCTGCGTAGGAGCCATTTCTGTGCTGCAAAGACAAGTGATTAGGCTTCAAAAGGAGCTAGATGATACGAATGAGGATTTGATTAGGTATGCAGCTTGTAGTGAGCACAATCCAATGTCAAGTAGTAATAGTGCTAATTCTCAGTTTGCAAGAAGGGCAGCTATGGGATTTCATGGTCAACATAGTAATTCGTCAAGTCTCTATTTCAATACTTCTCCATGGAATGATAATGGGCCAGGTTGGGGAGATAGAAGCCATGATAAATGA | 516 | 44.38 | MASSSYSNSPCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDDTNEDLIRYAACSEHNPMSSSNSANSQFARRAAMGFHGQHSNSSSLYFNTSPWNDNGPGWGDRSHDK | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 9541773 | 9542288 | - | Conep16aG0330900.1 | Cone16ag0939 | 455373 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone16ag0939 | 171 | Coils | Coil | 89 | 109 | - | - | |
Cone16ag0939 | 171 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - | |
Cone16ag0939 | 171 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Cone16ag0939 | 171 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 130 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag0081 | Cone-Chr16:414323 | Cone16ag0939 | Cone-Chr16:9541773 | 1.12E-70 | dispersed | |
Cone16ag0939 | Cone-Chr16:9541773 | Cone1ag0847 | Cone-Chr1:54241388 | 2.84E-57 | dispersed | |
Cone13ag0160 | Cone-Chr13:1004955 | Cone16ag0939 | Cone-Chr16:9541773 | 2.06E-63 | wgd | |
Cone16ag0939 | Cone-Chr16:9541773 | Cone19ag0159 | Cone-Chr19:905693 | 1.47E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44980 | PF04053 | Coatomer_WDAD | 1.30E-162 | CL0186 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone16ag0939 | - | - | - | 0.0 |