Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0970 ATGTACTTATCGGAAAATCCCCGTCCGATTGATTTCTACAAGGAGGCAGAATCAGAAAGGGACATGATTATCGAGGCAGTGACAAATGAGACTTTAGTACCTCACCACCACCATCAGAACATGATCCTCGGCGATAGTAGCGGAGGAGACGAGGAGCCGGAAGTGAAAGCTCCGAAGAAACGGGCCGAGACTTGGATACAGGAAGAGACTCGAAGCTTGATAGGCTTTCGCCGTGAGGTAGATGGACTTTTCAATACTTCCAAGTCTAACAAGCACCTATGGGATCAGATCTCCTCCAAGATGAGAGACAAAGGCTTCGATCGTTCTCCGACTATGTGTACGGATAAATGGAGAAACCTGCTCAAGGAGTTCAAGAAGGCTAGGCATCAAGCTAAAGGCGGGAATCGAGCTGCGAAGATGTCCTACTATGGCGAGCTCGAAGAGTTGCTTAGAGATAGGTCTAAGAACTCAGCTGCAGCTTATAAGATTTCCACGCCAAATAAAATTGATTCATACATTCAGTTCTCTGATAAAGGGCTGGATGATGGTACAATACCATTTGTATCTATAGAAGTGAACTTGGAAGCTCAGTTGGACCATGATGGCGATCCTCTTGCCATTACAGCTGCTGATGCAGTAGTAGCCAATGGGGTGCCTCCTTGGGGTTGGAGAGAAACCCCTGGAAATGCGGGAGCGGAGGGGCCTCCTTATTGTGGGAGGATTATATCAGTCAAGTTGGGAGATTACAGTAGAAGAATCGGAATTGACGGAACAGCTGAGGCAATTAAAGAGGCAATCAAATCTGCATTCAGGCTGAGGACTAAACGGGCATTTTGGTTGGAGGATGAAGACCAGGTTGTCAGGAGTCTTGATAGAGACATGCCTCTAGGCAACTATACACTTCAACTTGATGAGGGAATGACCATAAAATTATGCGTTTATGATGGGAGTGATCGTGTAGCTGTTCGAACAGAAGAGGTAACCTTATATACTGAGGACGATTTCCATGATTTTCTTACACGACGCGGTTTGTCTAGTTTAAGAGAGCTAAGAGATTATAGATGCGTCAATACCTTAGCTGATCTTCATTCTGGTGCAATGTACCAGGGGGTACGACTTCCAGGGGAATAG 1131 45.98 MYLSENPRPIDFYKEAESERDMIIEAVTNETLVPHHHHQNMILGDSSGGDEEPEVKAPKKRAETWIQEETRSLIGFRREVDGLFNTSKSNKHLWDQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKARHQAKGGNRAAKMSYYGELEELLRDRSKNSAAAYKISTPNKIDSYIQFSDKGLDDGTIPFVSIEVNLEAQLDHDGDPLAITAADAVVANGVPPWGWRETPGNAGAEGPPYCGRIISVKLGDYSRRIGIDGTAEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLQLDEGMTIKLCVYDGSDRVAVRTEEVTLYTEDDFHDFLTRRGLSSLRELRDYRCVNTLADLHSGAMYQGVRLPGE 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9673740 9675954 + Conep16aG0334100.1 Cone16ag0970 455404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0970 376 Pfam Myb/SANT-like DNA-binding domain 64 149 IPR044822 -
Cone16ag0970 376 Gene3D - 65 127 - -
Cone16ag0970 376 FunFam trihelix transcription factor GT-1 65 127 - -
Cone16ag0970 376 ProSiteProfiles Myb-like domain profile. 57 121 IPR001005 -
Cone16ag0970 376 CDD GT1 63 128 - -
Cone16ag0970 376 PANTHER FI21293P1 41 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0697 Cone-Chr12:6387898 Cone16ag0970 Cone-Chr16:9673740 3.12E-170 dispersed
Cone16ag0970 Cone-Chr16:9673740 Cone7ag1446 Cone-Chr7:10239024 9.31E-09 dispersed
Cone16ag0970 Cone-Chr16:9673740 Cone2ag0062 Cone-Chr2:301526 2.81E-80 wgd
Cone16ag0970 Cone-Chr16:9673740 Cone8ag0724 Cone-Chr8:7286476 3.52E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44983 PF00230 MIP 4.90E-76 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0970 - - - 0.0