Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0988 ATGAGAATGATCTGTTCAAGCAGGATTGAAGAAGCAGATCCACACTTCAAACATTACATAGAGAATATTGCTGGATACAAGATCCTTGCTCTAGTTGCATTCATTAAGGAAGACAGGTATTTAATGGGTTTTGTGTTTATGACAAGTGCTGTTGTTCTCTGTGTTTTCTTTGCACCAACTGCTGCCGGTCCTAGTATACCAGAAATTAAAGCTTACCTTAACGGAGTTGATACTCTTAACATGTATGGTGCCAACACTCTCATTGTTAAGATATTAGGAAGCATTGGAGCTGTTTCAGCAGGCTTAGATCTTGGCAAAGAAGGGCCTTTAGTTCATATAGGCGCTTGCATTGCTTCCTTCTTGGGCAAAGGTGGGCCCGACAAACACCGGATCAAATTGGGCTGGATCCGGTATCTGAACAACAATCGCGACCGACATGATCTCATAGCTTGTGAGGCCTCCTCTTCTGGCGATTGCGGTCTTTTCGGACAAGGAGGGTTGATTATGTTTGACGTGAGTAATGTTGTGTCTCACTCTTCACTTCAATATGCTTATACTTCCTTCCATTCCTGGCCAAATGCACTCCATGTGACCCGGCCACCCCTTTTAGAATCCACTTGCCCTACAAATGGAAAATCCGGAAACTTCAAGCAATTCAATTGTCCAGACGGTTACTACAACGACTTGGCCACTCTACTTCCTACAACAAATGATAATGCTGTAAGGAACATATTCTCAACCAATACTCCAACAGAATACCACCCCCTATCCCTTATAATCTTCTTCGCCCTCTATTGTATCCTTGGATTGGTTACTTTCGGAATTGCCGTCCCTTCTGGACTTTTCCTCCCAATCATCTTAATGGGTTTGGCATATGGACGCCTTATAGGTATAGTTTCGCGGTCTTATACAAGCATTGATCAAGGACGTGATGTGTAA 939 43.24 MRMICSSRIEEADPHFKHYIENIAGYKILALVAFIKEDRYLMGFVFMTSAVVLCVFFAPTAAGPSIPEIKAYLNGVDTLNMYGANTLIVKILGSIGAVSAGLDLGKEGPLVHIGACIASFLGKGGPDKHRIKLGWIRYLNNNRDRHDLIACEASSSGDCGLFGQGGLIMFDVSNVVSHSSLQYAYTSFHSWPNALHVTRPPLLESTCPTNGKSGNFKQFNCPDGYYNDLATLLPTTNDNAVRNIFSTNTPTEYHPLSLIIFFALYCILGLVTFGIAVPSGLFLPIILMGLAYGRLIGIVSRSYTSIDQGRDV 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9739563 9741173 - Conep16aG0335900.1 Cone16ag0988 455422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0988 312 Gene3D Clc chloride channel 216 309 - -
Cone16ag0988 312 Gene3D Clc chloride channel 11 164 - -
Cone16ag0988 312 SUPERFAMILY Clc chloride channel 235 301 IPR014743 -
Cone16ag0988 312 PRINTS Chloride channel signature 90 109 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone16ag0988 312 PRINTS Chloride channel signature 59 76 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone16ag0988 312 SUPERFAMILY Clc chloride channel 40 153 IPR014743 -
Cone16ag0988 312 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 18 154 IPR051280 GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER)
Cone16ag0988 312 Pfam Voltage gated chloride channel 235 302 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone16ag0988 312 Pfam Voltage gated chloride channel 49 153 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0988 Cone-Chr16:9739563 Cone8ag0780 Cone-Chr8:7787359 4.46E-77 dispersed
Cone16ag0988 Cone-Chr16:9739563 Cone2ag0049 Cone-Chr2:247321 2.86E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0988 K05016 - cit:102626077 261.536