Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag1003 ATGGAGAATTATCAGATGTTTCTACCGGCTTGTCCGAGGAACCCACAACTAGATTTTCCTATATCATCAACCAATAGTATATCAGCTAGTACTATTGGAAGCTCTCAAAGCTTCATGATGAATGCCTTCTATGGTGATCATCATCCCATTGTGAGTTCAAATAATGGATTTTTGGGATTGAAGATTCGCGATGATAGTAATGGAGGACAAGGAAGAGATATGTCTCATCAGCGGCAGCATCACGGGGATCATGTGGAATCAAGTGATCATAATGATGAGGAAGGAGGTAAGAAGAAGAAGAAGGGGGAGAAGAAGATAAGGAAGGCGAGATGCGCTTTTCAAACGAGGAGCCAAGTTGATATTCTTGATGATGGTTATCGTTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACAACAAATTTCCCAGGAGCTATTACCGATGCACATACCAAGGGTGCAACGTAAAGAAACAAGTTCAACGTCTAACAAGAGATGAAGGCGTAGTGGTGACTTCATACGAAGGGATTCACTCACATCCAATTGACAAGCCCACCGACAACTTTGAGCATATCTTAAATCAGATGCATATCTACACCCCCATCTGA 606 41.75 MENYQMFLPACPRNPQLDFPISSTNSISASTIGSSQSFMMNAFYGDHHPIVSSNNGFLGLKIRDDSNGGQGRDMSHQRQHHGDHVESSDHNDEEGGKKKKKGEKKIRKARCAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTRDEGVVVTSYEGIHSHPIDKPTDNFEHILNQMHIYTPI 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9799442 9800440 - Conep16aG0337600.1 Cone16ag1003 455437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag1003 201 ProSiteProfiles WRKY domain profile. 117 182 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag1003 201 SMART WRKY_cls 122 181 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag1003 201 MobiDBLite consensus disorder prediction 61 108 - -
Cone16ag1003 201 MobiDBLite consensus disorder prediction 66 100 - -
Cone16ag1003 201 Pfam WRKY DNA -binding domain 123 180 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag1003 201 FunFam WRKY transcription factor 57 108 182 - -
Cone16ag1003 201 Gene3D WRKY domain 107 182 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone16ag1003 201 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 77 182 IPR044810 GO:0003700(InterPro)
Cone16ag1003 201 SUPERFAMILY WRKY DNA-binding domain 114 181 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0604 Cone-Chr14:2996493 Cone16ag1003 Cone-Chr16:9799442 2.59E-58 dispersed
Cone16ag1003 Cone-Chr16:9799442 Cone6ag0813 Cone-Chr6:4129505 4.40E-37 dispersed
Cone16ag1003 Cone-Chr16:9799442 Cone2ag0036 Cone-Chr2:196168 2.51E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44985 PF04564 U-box 3.00E-15 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag1003 - - - 0.0