Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag1006 ATGGATCCCAAGGGCTCAACGACATCGAATTTCTTGACATCAAACATGGCTGAAAACAACAACAACAGCAACAGCAACAGCAACAAACCTGCAGAAATCAAAGATTTCCAGATTGCAATAGCAGAGAAAGAAGAAGGGAAGAAGCAATTAGCTCCAAAAAGAAGCTCAAACAAAGATAGACACACAAAAGTTGAAGGTAGAGGCAGAAGGATAAGGATGCCAGCTTTATGTGCGGCAAGGATATTCCAATTAACCAGAGAATTAGGTCACAAATCAGATGGGGAAACAATCCAATGGCTTCTACAGCAAGCAGAGCCATCAATAATTGCAGCCACAGGGACAGGAACTATTCCAGCCTCTGCTCTAGCTGCATCAGGTGTGTCGATTTCACATCAGACGGCTACTTTATCATCTGGGTTGCATTCCAAAATTGATGAAATGGGTGGTGGGTCCGGATTTGGGCCTGGAAGTAGTAGGACCAGTTGGGCTAATTTGGGTCGGACCCATGTGGCGGCGACAGGGTTGTGGCCACCTGTCAGTGGATTCTCTTCTGCTACAAATTTGGGGACTGAAAGCTCAAATTATTTGCAGAAAATGGGATTCCCTGGCTTTGATTTTGGTGGGAATAATAACATGAATGCTATGAGTTTTACTTCAATTTTAGGTGGGACCAATAATAATAATCAACACCTGCCTGGGTTAGAGCTTGGCTTGTCTCAAGATGGTAATATTGGGGTTTTAAATCCACAAGCTTTGACTCAGATTTATCAGCAGCAGATGGGTCAGTCTAGGGTTCAGCTTACGCACCACCACCAGCAACCGACTCAGCCTCAGCACCACCACCAGCACCACCATCAACAGCAGCAGCAAGATCAGCAGCAGCAGCAAGATGATTCCAAGGATGATTCCGAAGATTCAGGACAGTAG 927 45.31 MDPKGSTTSNFLTSNMAENNNNSNSNSNKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAASGVSISHQTATLSSGLHSKIDEMGGGSGFGPGSSRTSWANLGRTHVAATGLWPPVSGFSSATNLGTESSNYLQKMGFPGFDFGGNNNMNAMSFTSILGGTNNNNQHLPGLELGLSQDGNIGVLNPQALTQIYQQQMGQSRVQLTHHHQQPTQPQHHHQHHHQQQQQDQQQQQDDSKDDSEDSGQ 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9820009 9821503 + Conep16aG0337900.1 Cone16ag1006 455440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag1006 308 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 287 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone16ag1006 308 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
Cone16ag1006 308 Pfam TCP family transcription factor 56 300 IPR017887 -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 259 308 - -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 1 32 - -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 36 67 - -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 1 67 - -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag1006 Cone-Chr16:9820009 Cone19ag0075 Cone-Chr19:459768 8.85E-33 dispersed
Cone11ag0038 Cone-Chr11:200499 Cone16ag1006 Cone-Chr16:9820009 2.03E-83 wgd
Cone16ag1006 Cone-Chr16:9820009 Cone18ag1441 Cone-Chr18:9703268 1.07E-84 wgd
Cone16ag1006 Cone-Chr16:9820009 Cone2ag0034 Cone-Chr2:186883 2.99E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44986 PF00378 ECH_1 3.50E-39 CL0127 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag1006 - - - 0.0