Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone16ag1006 | ATGGATCCCAAGGGCTCAACGACATCGAATTTCTTGACATCAAACATGGCTGAAAACAACAACAACAGCAACAGCAACAGCAACAAACCTGCAGAAATCAAAGATTTCCAGATTGCAATAGCAGAGAAAGAAGAAGGGAAGAAGCAATTAGCTCCAAAAAGAAGCTCAAACAAAGATAGACACACAAAAGTTGAAGGTAGAGGCAGAAGGATAAGGATGCCAGCTTTATGTGCGGCAAGGATATTCCAATTAACCAGAGAATTAGGTCACAAATCAGATGGGGAAACAATCCAATGGCTTCTACAGCAAGCAGAGCCATCAATAATTGCAGCCACAGGGACAGGAACTATTCCAGCCTCTGCTCTAGCTGCATCAGGTGTGTCGATTTCACATCAGACGGCTACTTTATCATCTGGGTTGCATTCCAAAATTGATGAAATGGGTGGTGGGTCCGGATTTGGGCCTGGAAGTAGTAGGACCAGTTGGGCTAATTTGGGTCGGACCCATGTGGCGGCGACAGGGTTGTGGCCACCTGTCAGTGGATTCTCTTCTGCTACAAATTTGGGGACTGAAAGCTCAAATTATTTGCAGAAAATGGGATTCCCTGGCTTTGATTTTGGTGGGAATAATAACATGAATGCTATGAGTTTTACTTCAATTTTAGGTGGGACCAATAATAATAATCAACACCTGCCTGGGTTAGAGCTTGGCTTGTCTCAAGATGGTAATATTGGGGTTTTAAATCCACAAGCTTTGACTCAGATTTATCAGCAGCAGATGGGTCAGTCTAGGGTTCAGCTTACGCACCACCACCAGCAACCGACTCAGCCTCAGCACCACCACCAGCACCACCATCAACAGCAGCAGCAAGATCAGCAGCAGCAGCAAGATGATTCCAAGGATGATTCCGAAGATTCAGGACAGTAG | 927 | 45.31 | MDPKGSTTSNFLTSNMAENNNNSNSNSNKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAASGVSISHQTATLSSGLHSKIDEMGGGSGFGPGSSRTSWANLGRTHVAATGLWPPVSGFSSATNLGTESSNYLQKMGFPGFDFGGNNNMNAMSFTSILGGTNNNNQHLPGLELGLSQDGNIGVLNPQALTQIYQQQMGQSRVQLTHHHQQPTQPQHHHQHHHQQQQQDQQQQQDDSKDDSEDSGQ | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 9820009 | 9821503 | + | Conep16aG0337900.1 | Cone16ag1006 | 455440 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone16ag1006 | 308 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 21 | 287 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cone16ag1006 | 308 | ProSiteProfiles | TCP domain profile. | 57 | 111 | IPR017887 | - | |
Cone16ag1006 | 308 | Pfam | TCP family transcription factor | 56 | 300 | IPR017887 | - | |
Cone16ag1006 | 308 | MobiDBLite | consensus disorder prediction | 259 | 308 | - | - | |
Cone16ag1006 | 308 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cone16ag1006 | 308 | MobiDBLite | consensus disorder prediction | 36 | 67 | - | - | |
Cone16ag1006 | 308 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Cone16ag1006 | 308 | MobiDBLite | consensus disorder prediction | 259 | 273 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag1006 | Cone-Chr16:9820009 | Cone19ag0075 | Cone-Chr19:459768 | 8.85E-33 | dispersed | |
Cone11ag0038 | Cone-Chr11:200499 | Cone16ag1006 | Cone-Chr16:9820009 | 2.03E-83 | wgd | |
Cone16ag1006 | Cone-Chr16:9820009 | Cone18ag1441 | Cone-Chr18:9703268 | 1.07E-84 | wgd | |
Cone16ag1006 | Cone-Chr16:9820009 | Cone2ag0034 | Cone-Chr2:186883 | 2.99E-165 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44986 | PF00378 | ECH_1 | 3.50E-39 | CL0127 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone16ag1006 | - | - | - | 0.0 |