Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag1006 ATGGATCCCAAGGGCTCAACGACATCGAATTTCTTGACATCAAACATGGCTGAAAACAACAACAACAGCAACAGCAACAGCAACAAACCTGCAGAAATCAAAGATTTCCAGATTGCAATAGCAGAGAAAGAAGAAGGGAAGAAGCAATTAGCTCCAAAAAGAAGCTCAAACAAAGATAGACACACAAAAGTTGAAGGTAGAGGCAGAAGGATAAGGATGCCAGCTTTATGTGCGGCAAGGATATTCCAATTAACCAGAGAATTAGGTCACAAATCAGATGGGGAAACAATCCAATGGCTTCTACAGCAAGCAGAGCCATCAATAATTGCAGCCACAGGGACAGGAACTATTCCAGCCTCTGCTCTAGCTGCATCAGGTGTGTCGATTTCACATCAGACGGCTACTTTATCATCTGGGTTGCATTCCAAAATTGATGAAATGGGTGGTGGGTCCGGATTTGGGCCTGGAAGTAGTAGGACCAGTTGGGCTAATTTGGGTCGGACCCATGTGGCGGCGACAGGGTTGTGGCCACCTGTCAGTGGATTCTCTTCTGCTACAAATTTGGGGACTGAAAGCTCAAATTATTTGCAGAAAATGGGATTCCCTGGCTTTGATTTTGGTGGGAATAATAACATGAATGCTATGAGTTTTACTTCAATTTTAGGTGGGACCAATAATAATAATCAACACCTGCCTGGGTTAGAGCTTGGCTTGTCTCAAGATGGTAATATTGGGGTTTTAAATCCACAAGCTTTGACTCAGATTTATCAGCAGCAGATGGGTCAGTCTAGGGTTCAGCTTACGCACCACCACCAGCAACCGACTCAGCCTCAGCACCACCACCAGCACCACCATCAACAGCAGCAGCAAGATCAGCAGCAGCAGCAAGATGATTCCAAGGATGATTCCGAAGATTCAGGACAGTAG 927 45.31 MDPKGSTTSNFLTSNMAENNNNSNSNSNKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAASGVSISHQTATLSSGLHSKIDEMGGGSGFGPGSSRTSWANLGRTHVAATGLWPPVSGFSSATNLGTESSNYLQKMGFPGFDFGGNNNMNAMSFTSILGGTNNNNQHLPGLELGLSQDGNIGVLNPQALTQIYQQQMGQSRVQLTHHHQQPTQPQHHHQHHHQQQQQDQQQQQDDSKDDSEDSGQ 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9820009 9821503 + Conep16aG0337900.1 Cone16ag1006 455440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag1006 308 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 287 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone16ag1006 308 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
Cone16ag1006 308 Pfam TCP family transcription factor 56 300 IPR017887 -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 259 308 - -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 1 32 - -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 36 67 - -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 1 67 - -
Cone16ag1006 308 MobiDBLite consensus disorder prediction 259 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag1006 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag1006 Cone-Chr16:9820009 Cone19ag0075 Cone-Chr19:459768 8.85E-33 dispersed
Cone11ag0038 Cone-Chr11:200499 Cone16ag1006 Cone-Chr16:9820009 2.03E-83 wgd
Cone16ag1006 Cone-Chr16:9820009 Cone18ag1441 Cone-Chr18:9703268 1.07E-84 wgd
Cone16ag1006 Cone-Chr16:9820009 Cone2ag0034 Cone-Chr2:186883 2.99E-165 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1521 . 29 250 TCP Transcription Factor Family AT5G23280 62.7 3.5e-65 245.7
Cone5ag0514 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.0e-64 241.9
Cone14ag0318 . 1 348 TCP Transcription Factor Family AT2G45680 50.8 6.6e-70 261.9
Cone15ag0348 . 71 342 TCP Transcription Factor Family AT2G45680 54.6 1.6e-63 240.7
Cone19ag0075 . 78 175 TCP Transcription Factor Family AT3G47620 88.9 6.8e-41 166.0
Cone19ag0952 . 67 154 TCP Transcription Factor Family AT3G47620 92.0 4.9e-39 159.8
Cone19ag0075 . 78 172 TCP Transcription Factor Family AT1G69690 87.4 3.6e-38 156.4
Cone2ag0034 . 75 304 TCP Transcription Factor Family AT3G27010 60.4 5.9e-62 235.3
Cone16ag1006 . 32 266 TCP Transcription Factor Family AT3G27010 60.5 7.7e-62 235.0
Cone18ag1441 . 1 291 TCP Transcription Factor Family AT3G27010 53.2 1.2e-54 211.1
Cone11ag0038 . 5 260 TCP Transcription Factor Family AT3G27010 52.3 1.1e-52 204.5
Cone5ag0514 . 1 252 TCP Transcription Factor Family AT5G08330 55.4 4.8e-64 241.9
Cone1ag1521 . 1 248 TCP Transcription Factor Family AT5G08330 55.3 3.1e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44986 PF00378 ECH_1 3.50E-39 CL0127 Cone TF