Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag1029 ATGTTACCGAGGGCTAACAGTGCTGTTTGGACAGAGGTTGACGAAGAAGACGGTGCCGCGTCTTGGACCAGAAACAGCAGCGAGGCAGAGGTAGAGCTTAATAGGAAAGACGTCAATTTTGGTATGGACGCTTCTTCTCTTACTTCGTTTAAATCCATGTTGGAAGCTGACTGGTACATGAATTCTGCTATAAACTCATCTAAACAAGATCTTCACACCCTCTCAAACCACCAAGAAATCAGCTTTGTTTCAAATCCAGCCGACAATCTGCTCTTACACCCCCAAATCGACTCTTCCTCTTCCTGCTCCCCCTCACAGGCGCTCACTCTCGACTCATCACAGTTACAGTCCTTTTTCCCTCCAAAATCCTGCTTCTCTTCGCTCCTTAATGTTCCCAATTCTTTTGACAATGGTTTCGATATGGGCTCTGAAACTGCTTTCCTCAGCTCATTTTCTGCCAATCATTCCCCTGTCTTTATGGCTGCCATGAATTCTCAATCTCAAATTGCTACTCTGGAACTGGGTCCAAGCTCTGAATTACCAATGATTCGGTCTGTTGACCCGGTCCCTCTCGGGTCAGGGTTTAATCCCGAAGGTAAGGATGAATTTGGTAGCGCTCTGTTTCCGAACTCGTCAAACGTTTTGGGACCTCTTCAAGCTTTCTCTCCCGTGAATGCCCAGCTCACACTATTTCAGAAGCGAGCTGCGCATCGACAGAGCTCATTCAGAGCTGATAAGTTGGGAAATTTAGATGTTTCGGGATTTAGATTTGGCAGAGGATCATTGGCAATAGAGACTATGGAGAAGAAGAAGAGGAAGAAGAATGAGGAAGGTGAGATTGAAGCTGCAAGCGTTGTTATCTCTAGCTTTAATTATGACTCCGATGAGCTCAATGAGTACTATAATGTGGAGGAAAATACCAAAAATGGTGCAAGTAATTGTAATGCAAATAATAGTGCAAGTGGTGGTGATAGAAAGGGCAAGAAGAAGGGGCTGCCAGCCAAGAATCTGATGGCTGAAAGGCGGAGGAGGAAGAAGCTCAATGATCGGCTCTATGTGCTTAGGTCGGTCGTTCCCAGGATCAGCAAGATGGATAGAACTTCAATACTTGGAGATGCCATCGATTACTTGAAGGACCTTCTGCAAAGGATCAATGATCTTCATAATGAACTTGAGTCGACCCTGCAAAGCTCTCTGTTACCGCCTTCTAGAAGCTTTCATCCTTTAACGACTACTCTTACCTGCCCCACAGTCAAGGAAGAGCTATGCCCAAGCGCATTAACTAGCCCCAAAAACCATCCTGCAAGGGTGGAGGTGAGGGTAAGTGAAGGGAGAGGAGTGAGTATCCACATGTTCTGCCCTCCAAGAGCTGGCCTCCTGCTGTCGAGTATGAGAGCTCTAGAGAGCCTCGGATTGGACATAGAGCAAGCAGTTATCAGCTGTATCAATGGATTCACTTTGGATGTATTCCGTGCTGAGCAATGCAGGGATACACAACATGTCTTGCCTGACCAAATTAAAGCTCTACTTCTGGATTCCGCTGGGTTCGATACTATGTAG 1560 46.22 MLPRANSAVWTEVDEEDGAASWTRNSSEAEVELNRKDVNFGMDASSLTSFKSMLEADWYMNSAINSSKQDLHTLSNHQEISFVSNPADNLLLHPQIDSSSSCSPSQALTLDSSQLQSFFPPKSCFSSLLNVPNSFDNGFDMGSETAFLSSFSANHSPVFMAAMNSQSQIATLELGPSSELPMIRSVDPVPLGSGFNPEGKDEFGSALFPNSSNVLGPLQAFSPVNAQLTLFQKRAAHRQSSFRADKLGNLDVSGFRFGRGSLAIETMEKKKRKKNEEGEIEAASVVISSFNYDSDELNEYYNVEENTKNGASNCNANNSASGGDRKGKKKGLPAKNLMAERRRRKKLNDRLYVLRSVVPRISKMDRTSILGDAIDYLKDLLQRINDLHNELESTLQSSLLPPSRSFHPLTTTLTCPTVKEELCPSALTSPKNHPARVEVRVSEGRGVSIHMFCPPRAGLLLSSMRALESLGLDIEQAVISCINGFTLDVFRAEQCRDTQHVLPDQIKALLLDSAGFDTM 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9923448 9925357 + Conep16aG0340200.1 Cone16ag1029 455463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag1029 519 SMART finulus 337 386 IPR011598 GO:0046983(InterPro)
Cone16ag1029 519 MobiDBLite consensus disorder prediction 307 322 - -
Cone16ag1029 519 FunFam BHLH transcription factor 327 395 - -
Cone16ag1029 519 MobiDBLite consensus disorder prediction 307 335 - -
Cone16ag1029 519 Pfam Helix-loop-helix DNA-binding domain 338 380 IPR011598 GO:0046983(InterPro)
Cone16ag1029 519 Coils Coil 377 397 - -
Cone16ag1029 519 CDD bHLH_AtAMS_like 334 401 - -
Cone16ag1029 519 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 293 516 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone16ag1029 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 402 IPR036638 GO:0046983(InterPro)
Cone16ag1029 519 Gene3D - 325 396 IPR036638 GO:0046983(InterPro)
Cone16ag1029 519 Pfam Plant bHLH transcription factor, ACT-like domain 437 509 IPR054502 -
Cone16ag1029 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983(InterPro)
Cone16ag1029 519 CDD ACT_UUR-ACR-like 449 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag1029 Cone-Chr16:9923448 Cone4ag1276 Cone-Chr4:10485093 1.21E-33 dispersed
Cone11ag0017 Cone-Chr11:112158 Cone16ag1029 Cone-Chr16:9923448 9.90E-178 wgd
Cone16ag1029 Cone-Chr16:9923448 Cone18ag1463 Cone-Chr18:9795181 1.46E-173 wgd
Cone16ag1029 Cone-Chr16:9923448 Cone2ag0011 Cone-Chr2:91010 8.02e-311 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44990 PF08523 MBF1 6.10E-12 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag1029 - - - 0.0