Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag1030 ATGTCCATCTTGCCTTCTCAGACTCAAGGTCACACATCGTCGTCTTCTTCTTCCTCAAATCCCTCTTTTAACCCTGATTCTCAACATGGAGAGTTCACCTCTCTATCACCACAACCGCAATCCCTCCAATCCCTTCAAATCCAGGATTCCCAATCTACCGTCCCTGATTCCCCTCATAATTCAGGCTCATTGGCTCAAGATGCACACGATTCTGGTGGATCTTCCAAAAAGGTAAATGCAGCGGGGACACAAAATGGTGTGAAGACTTCATTCCATGAAAACACAAACAGTCGTTCACGGCGTCACTCAGGTGGGCCAGGAGTTAGGTCAGTCCATTTCAGAGGAAAAACGCCAGACATGTCTTCTCAAGGTCAGCAGAGCGCTGGGACTCTTGGCTCTCCTGGTAGTACTCCAACTTCAACTGGAAGAAGAGCCCAAATGATGAATGGCAACCACTTGCTGAATTTTCACTATGGTCCCATTTCTCGGCCTCAACCGAGAGCTCCTCCTCCACGAAGGCAACAAAAGATAAAGCCATATAACAAAGATCTATTTCTTCAGGCTAATTACAAATTCATAGTACTAGATTCAGGGAATTATTCTCCAGAGTCTATGGATCCCGATAAGATGCTGCAGTGGGAGGATATTATATGTGTCAGATACTCAACACCATCTTTGGTTCAGTGCCCCATTTGTTTGGAATATCCTCTATGTCCACAAATGTCCTCATGTGGACATATTTTTTGTTTCCCCTGCATTCTGCGTTACTTGTTAATGGGTGTGGAGGATCACAAAGGTGAATGCTGGAAAAGATGCCCTTTATGTTTTGTGATGATATCTCCAAAGGACTTATACACTGTGTACATTGAGAATGTGAAGCAGTATTCAGTTGGTGATACCATAGATGTCATGCTTTTAACCCGTCAAAAAGAGTCATTCAGTGTATCATATAAAAATCGCCAAGAGAGTGATGGCGCGTTGTTTGGCCACAATGATATCTATGATCCTATCTCAAAGTTTACACTTACCTCAGATGTGGACCTCTCTGTTAGAGAAGCGATATCAGATCTAGATGATTGGTTGGTTAAAGCAGATTCAGGGCTTGTTGATGACCTTGAGAGGCTTCCATATGTTTCAGCTGCAATGGAGCAATTAGAACAGAGGAAAAAGTATTGGAATGAACACAAGACATATGGGAGCTCTAAATCTACTAGTTATACTGATTCTCAAACAGAATCTCATTTACTTCATTCATCTCCTAATGCTAATGCCATAACCTATAAGCCAGATGGTACTTGTTTGGATGAGACTTCTTATGTGGTTGAATCGTTGGATAGCGAAGAAAATGTTTCTTCATCCTATGATGAAGGGAAGAGTGCTCAAAGACATCTAAATGGATGTAGAGATGTAATGGACAAGGACTCTTACAATTTCTACCAGGCTGCAGATGGTCAACACCTCATTCTTCATCCATTATGCATGAAGTGTCTTCTACACCATTATGGGGGCTATGATATGCTTCCACACAGAATAAGTGGAAAGATCCTGCAGTTGGAGACAGTAACCCAGTCCGAGGCAATGAGGAAGCGCTATCGTTATTTAAGTCATTTCTCTTTGACGACGACATTTCAGCTCTGCGAAATTGATCTCAGTGAACTATTGCCTTCTGCTGCCCTGGTTCCATTTATTGATGAAATAAAGAAACGCGAAAAACAGAGAAAGCAACTTGCTAAAAAGGAGCTGAAGGAGAAAATCAAGACGGAAGCTAGCACAGAGTATCCTATCTCCATATTGCCCAATTTTAGACAGTACAGTCATGACAACTCCCCAATGTTCTCAATGGATGATTTTGAAGCTTTGGGAAGTAGCATGACAACATCAAGCCCTCCAGCTGGTGGAGAGAGGAAGCTACTATTTTCTAGTGTTACAAGACTTGGTTTTGCAGCTGCCCATCATTTGCCTGCCTTGAAAATTGAGGAAACCAATTCTTCCAATAACAATCAAGTGGTGTCAAGTGACCCATCATCTGTTTGGATAGGTTCGGGCAGTGCCCCATCATTTGCTAATGTAATATCAAGAGCCAAGTTAGTTGAAAACATGGATGTAGCAGCTGCAGAGGCACCAGAAGCCAAGACAAATGAAGTGGGTAGGAAGGGAAAGAAACCAAGTCGTGTCCTTCTGTCTACGGCTGGTGGTCGACGCTACTGA 2208 42.84 MSILPSQTQGHTSSSSSSSNPSFNPDSQHGEFTSLSPQPQSLQSLQIQDSQSTVPDSPHNSGSLAQDAHDSGGSSKKVNAAGTQNGVKTSFHENTNSRSRRHSGGPGVRSVHFRGKTPDMSSQGQQSAGTLGSPGSTPTSTGRRAQMMNGNHLLNFHYGPISRPQPRAPPPRRQQKIKPYNKDLFLQANYKFIVLDSGNYSPESMDPDKMLQWEDIICVRYSTPSLVQCPICLEYPLCPQMSSCGHIFCFPCILRYLLMGVEDHKGECWKRCPLCFVMISPKDLYTVYIENVKQYSVGDTIDVMLLTRQKESFSVSYKNRQESDGALFGHNDIYDPISKFTLTSDVDLSVREAISDLDDWLVKADSGLVDDLERLPYVSAAMEQLEQRKKYWNEHKTYGSSKSTSYTDSQTESHLLHSSPNANAITYKPDGTCLDETSYVVESLDSEENVSSSYDEGKSAQRHLNGCRDVMDKDSYNFYQAADGQHLILHPLCMKCLLHHYGGYDMLPHRISGKILQLETVTQSEAMRKRYRYLSHFSLTTTFQLCEIDLSELLPSAALVPFIDEIKKREKQRKQLAKKELKEKIKTEASTEYPISILPNFRQYSHDNSPMFSMDDFEALGSSMTTSSPPAGGERKLLFSSVTRLGFAAAHHLPALKIEETNSSNNNQVVSSDPSSVWIGSGSAPSFANVISRAKLVENMDVAAAEAPEAKTNEVGRKGKKPSRVLLSTAGGRRY 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9925862 9930355 - Conep16aG0340300.1 Cone16ag1030 455464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag1030 735 ProSiteProfiles Zinc finger RING-type profile. 229 275 IPR001841 -
Cone16ag1030 735 SUPERFAMILY RING/U-box 228 282 - -
Cone16ag1030 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 323 IPR013083 -
Cone16ag1030 735 MobiDBLite consensus disorder prediction 1 93 - -
Cone16ag1030 735 SMART ring_2 229 275 IPR001841 -
Cone16ag1030 735 MobiDBLite consensus disorder prediction 1 174 - -
Cone16ag1030 735 Coils Coil 567 587 - -
Cone16ag1030 735 ProSitePatterns Zinc finger RING-type signature. 244 253 IPR017907 -
Cone16ag1030 735 PANTHER RING FINGER 10 FAMILY MEMBER 39 735 IPR039739 GO:0000976(PANTHER)|GO:0045944(PANTHER)
Cone16ag1030 735 Pfam Zinc finger, C3HC4 type (RING finger) 229 275 IPR018957 GO:0046872(InterPro)
Cone16ag1030 735 MobiDBLite consensus disorder prediction 116 148 - -
Cone16ag1030 735 MobiDBLite consensus disorder prediction 707 735 - -
Cone16ag1030 735 CDD RING-HC_RNF10 227 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag1030 Cone-Chr16:9925862 Cone3ag1414 Cone-Chr3:32967377 1.09E-08 dispersed
Cone16ag1030 Cone-Chr16:9925862 Cone2ag0010 Cone-Chr2:86071 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag1030 K26979 - vvi:100248015 842.802