Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag0006 | ATGGTACTTCTATTAGGAGCGTGCCCTGAGTATGGCATACTCGTTTACGAGTACATGGCCAATGGAAGCTTAGACAATTGTATCTTTAGGAAAGGGAAGACCCCAGTTCTGTCCTGGCAGATCAGATTCCGAATCGCTGCAGAGATTGGCACTGGATTGCTGTTCCTCCACCAAACCAAGCCAGAGCCGTTAGTCCATCGCGACCTTAAGCCAGGGAACATATTATTAGACCACAACTATGTGAGTAAGATTAGTGATGTTGGATTGGCAAGGCTTGTCCCTCTAATCGCAGAAAATGTAACACAGTGCTGCATGACATCAGCAGCAGGAACTTTCTGCTACATTGATCCCGAATATCAGCAGACTGGAATGCTCAGGGTAAAATCGGATGTGTATTCTCTAGGGATCATGCTTCTACAATTGCTAACGGCAAAGCCCCCTATGGGACTGGCTCACCATGTAGAACGAGCAATTGAGAAGGGGAGATTTTCTGAGATGATGGATCCTGCAGTGAAGGACTGGCCAAAGGAAGAGGCCCTGCGCTTTGCCAAGCTCGCACTCAGTTGTGCCGAACTCAGAAGGAAAGACAGGCCAGATCTTGGCAGTGAGGTGTTGCCGGAGCTCAATAAGCTGAGAGAATTTGCTGATAAGAGCATTAGCTGTATCATGGGAGGCACATTAATTGTTCAAAGCCACATTCCCATTCAACATCAACATGAGGTGATCATGAGTTCAAATTAA | 741 | 46.83 | MVLLLGACPEYGILVYEYMANGSLDNCIFRKGKTPVLSWQIRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLARLVPLIAENVTQCCMTSAAGTFCYIDPEYQQTGMLRVKSDVYSLGIMLLQLLTAKPPMGLAHHVERAIEKGRFSEMMDPAVKDWPKEEALRFAKLALSCAELRRKDRPDLGSEVLPELNKLREFADKSISCIMGGTLIVQSHIPIQHQHEVIMSSN | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 58363 | 59103 | - | Conep17aG0000600.1 | Cone17ag0006 | 455483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag0006 | 246 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 64 | 76 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cone17ag0006 | 246 | PIRSF | ILK | 1 | 220 | - | - | |
| Cone17ag0006 | 246 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 216 | - | - | |
| Cone17ag0006 | 246 | Pfam | Protein kinase domain | 12 | 198 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cone17ag0006 | 246 | FunFam | U-box domain-containing protein 51 | 19 | 218 | - | - | |
| Cone17ag0006 | 246 | SMART | serkin_6 | 1 | 205 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cone17ag0006 | 246 | ProSiteProfiles | Protein kinase domain profile. | 1 | 215 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cone17ag0006 | 246 | PANTHER | OS02G0152300 PROTEIN | 1 | 218 | IPR051348 | - | |
| Cone17ag0006 | 246 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 200 | IPR011009 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0006 | Cone-Chr17:58363 | Cone4ag1867 | Cone-Chr4:13376518 | 1.83E-122 | dispersed | |
| Cone17ag0006 | Cone-Chr17:58363 | Cone20ag1403 | Cone-Chr20:8955612 | 7.78E-164 | wgd | |
| Cone17ag0006 | Cone-Chr17:58363 | Cone20ag1403 | Cone-Chr20:8955612 | 7.78E-164 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 82235 | PF02536 | mTERF | 1.30E-09 | No_clan | Cone | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag0006 | - | - | - | 0.0 |