Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0023 ATGAAGCTTGTTTCCAATTGTTTCTTGTTGCTGTTATGCTTCTTTCTTAGCATTTATAAGATTAACGTATCTGCTCTTCTGACCCAAGATGGGGTGACTTTATTGTCACTTCAGAGGCACTGGGCTTCCATGCCTACGTCTCTAACCTCCAGCTGGAATGCCTCCGATGCCACTCCATGCTCATGGCTTGGAGTTCAATGTGGCAATTCCACCAACTTTGTTGTCTCCTTCAACCTTTCCGGGTTCGGCATTTCGGGTCAGCTAGGACCTGAAATAGCTAACCTCACCCATTTAAACACCATAGATTTAAGCGTCAATAGCTTATCAGGCAAAATACCTATGGAGTTAGGCAATTGCACTATGCTGAAACACCTAGATCTCTCTACAAACAGTTTTACTGGTTCAATACCTGAAACTTTGAACAACCTGCAGAATTTACAGCTTCTCAACCTTTATGGCAACTCAATGAGTGGTGAAATACCCGAGTCCTTGTTTCAAATCCCATATTTGCAGTCTGTTTTTCTCAATAATAACAATTTCAATGGCTCAATTCCTGCAAGTATTGGGAATATGAGCGAGATTACGACCTTGTATTTATATGGTAATCTGTTGTCTGGAACTGTACCTTCCTCAATAGGGAATTGCAGTAAGCTAGAAACGCTTTATTTAGATCAGAATCAACTGGAGGGAACCTTGCCGGATAGTATAACCCTTCTTGAGAATCTTGGTACTCTTGGAGTGAGCCGAAACAATCTTGAGGGTAACATTCCTTTAAGTTGGGGAAAATGCGAGAATTTAGGATTCTTAGATTTGTCATTCAATGATTTTACAGGAGAGATACCTTCAAGCTTAAGCAACTGTAGTAGTTTAACCACGTTGATTCTTGTTCACGCAAACCTAACAGGCAGTATCCCTTCTTCCTTTGGTCTACTATGTAACCTTTCACATTTAGACCTGTCTGAAAACAGTTTGTCCGGGAAAATACCTTCTGAACTTGGGAACTGTAAGTCCTTGAAGAGCTTGTTGTTATACACAAACGAATTTGAGGGGGAGATTCCTAGCGAATTAGGGCAGCTAAGTCAACTAGAAGACCTTGAATTATTCGCCAATAATTTGACCGGACAGATTCCGATGAGTATTTGGAAAATCCAAAGTCTGAAATACCTTCTTATCTATAACAATGATCTCTCTGGGGAATTACCTTTGGAAATGACCGAGCTCAAACAACTCCAAAACATCACCTTGTACAACAACCAATTTTCCGGAATCATACCTCAGAGTTTGGGGATTAATAGTAGTTTAGTGCGGTTTGACTTTACGAATAACAAGTTTAGTGGTCAGATCCCTCCAAATCTTTGTTTCGGAAAGCAGTTAGAAGTGTTGAATATGGGCTTGAATCAGCTTCAAGGAGGCATACCTTCTGATGTAGGAAAGTGTTCAACTTTACAAAGGTTGATCCTGAGAGAAAATAATCTGACTGGACCTCTTCCAGTATTTGCAGAAAACTCCAGCCTTTCTTACATGCATATTGGTGAAAATAAACTTGAAGGAGAAATTACCTCGAGTTTAGGCAATTGTGCTAATCTTACTTTCATTAATTTGTCTGGTAATAAATTTACGGGGCTGATTCCGGACAAGTTGGGAAATCTCTTGAATCTACATACTTTAGATTTTTCTCATAACCTCTTGGAAGGTTCTTTACCTTCTCTGCTATCAAATTGTTCCAGATTGGATAAATTTGATGTTGGGTTCAATAAACTGAACGGTTCTATTCCAACAAGTTTGAGGAGTTGGACAGATTTGTCTACCTTGGTCTTGAGAGAGAATCGATTTTCTGGGGGTATTCCAGGTTTCTTTTCGGAATTTGAAAAGCTTTTGGAGCTAGAACTTGGAGGGAACCTGTTCGGGGGTGAGATTCCTTCATCTATAGGATTGTTGAACAATCTTTTGTATGGCTTGAATCTTAGCGACAATGGGTTGATGGGTCAAGTACCTTCTGAGCTAGTCCATCTGAACATGCTACAACAACTGGATATATCTCACAACAACTTGACAGGAGCTTTAACTGTTATAGGGGAAATGGATTCATTATTCGAGGTAAATGTTTCGGACAACCTCTTCACTGGCTCCGTACCCGAATCACTGATGAAGTTTCTAGAATCTTCTCCCTCTACATTCTCGGGTAATCCTGGTCTATGCATCAGTTGTCTTTCATCATCAAATAGCTCAACTTGCAATGGGGAAAGCAATTTCAATCTCTGCAAAGATCTATCAAGCTCCCATCAAAGGCTTACTAAAGTTGAAATTGCAATGATAACACTTGGATCCACACTCTTTATTGTCTTTCTACTTGGTCTAGTTTTGTTTTTTACATGCTTCCGGAAAAGGCCAAAGCCAAAACTTGAGATATCAGCACAAGAGGGATCATCTACTTTGCTTAACAAGGTAATGCAAGCTACTGAAAACTTGAATGAGAGACATGTAGTTGGGAGAGGAGCTCATGGAGTTGTCTATAAAGCCTCCCTTGGCCCAGACCGAGTATTTGCTGTAAAGAAGCTTGTATTTACCGGACATTTAGGAGGAAGAGGAAGTATGGTTAGAGAGATAGAAACAGTAGGGAAAATCAGACATAGGAACCTCATTAAATTGGAAGACTTTTGGCTTAAAGAGGACTATGGTTTGATCTTGTATAAGTACATGCCAAATGGAAGCCTCCATGATGTTTTACATGAAATGAATCCAAAACCGATTCTAAAATGGGATGTTCGGTTTAAGATAGCGCTTGGAGTGGCACATGGATTAGCTTATCTCCATTTCGATTGTGATCCTGCTATTGTGCACAGAGACATCAAACCGCAGAACATTCTTTTAGATTCTGAGATGGAGCCTCATATTGCTGATTTTGGGATAGCAAAGTTGTTAGATCAGTCTTCTACTTCAGCTCCCTCATCTTTTGTTGCAGGTACATTTGGCTACATTGCACCAGAGAATGCATTCAATACATCAAAGAGCAAGGTATCGGATGTGTATAGTTATGGGGTTGTTTTGCTCGAGTTGATAAGCAGGAAGAAGGCGGTGGGCCCATCATTTACTGAAGGAACGGACATTGTGAGCTGGGTTAGATCTGTTTGGAGAAACAGACGAGGAGTGAATGACATTGCCGATTCGAGTCTCAAGGAAGAACTTTCGGAATTGGAGATTATGGACCAAGTTAGTGATGTTATTTTGTTGGCTTTGAGTTGTACCAAGAAGGAACCAAGCAAGAGACCTACAATGAGGGATGTTGTTATGCAGTTGTGTGATGCGAACGTGCGAAGAAGGAGCAAGCCAGCTACCAGTTTTTCTTAA 3348 40.44 MKLVSNCFLLLLCFFLSIYKINVSALLTQDGVTLLSLQRHWASMPTSLTSSWNASDATPCSWLGVQCGNSTNFVVSFNLSGFGISGQLGPEIANLTHLNTIDLSVNSLSGKIPMELGNCTMLKHLDLSTNSFTGSIPETLNNLQNLQLLNLYGNSMSGEIPESLFQIPYLQSVFLNNNNFNGSIPASIGNMSEITTLYLYGNLLSGTVPSSIGNCSKLETLYLDQNQLEGTLPDSITLLENLGTLGVSRNNLEGNIPLSWGKCENLGFLDLSFNDFTGEIPSSLSNCSSLTTLILVHANLTGSIPSSFGLLCNLSHLDLSENSLSGKIPSELGNCKSLKSLLLYTNEFEGEIPSELGQLSQLEDLELFANNLTGQIPMSIWKIQSLKYLLIYNNDLSGELPLEMTELKQLQNITLYNNQFSGIIPQSLGINSSLVRFDFTNNKFSGQIPPNLCFGKQLEVLNMGLNQLQGGIPSDVGKCSTLQRLILRENNLTGPLPVFAENSSLSYMHIGENKLEGEITSSLGNCANLTFINLSGNKFTGLIPDKLGNLLNLHTLDFSHNLLEGSLPSLLSNCSRLDKFDVGFNKLNGSIPTSLRSWTDLSTLVLRENRFSGGIPGFFSEFEKLLELELGGNLFGGEIPSSIGLLNNLLYGLNLSDNGLMGQVPSELVHLNMLQQLDISHNNLTGALTVIGEMDSLFEVNVSDNLFTGSVPESLMKFLESSPSTFSGNPGLCISCLSSSNSSTCNGESNFNLCKDLSSSHQRLTKVEIAMITLGSTLFIVFLLGLVLFFTCFRKRPKPKLEISAQEGSSTLLNKVMQATENLNERHVVGRGAHGVVYKASLGPDRVFAVKKLVFTGHLGGRGSMVREIETVGKIRHRNLIKLEDFWLKEDYGLILYKYMPNGSLHDVLHEMNPKPILKWDVRFKIALGVAHGLAYLHFDCDPAIVHRDIKPQNILLDSEMEPHIADFGIAKLLDQSSTSAPSSFVAGTFGYIAPENAFNTSKSKVSDVYSYGVVLLELISRKKAVGPSFTEGTDIVSWVRSVWRNRRGVNDIADSSLKEELSELEIMDQVSDVILLALSCTKKEPSKRPTMRDVVMQLCDANVRRRSKPATSFS 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 175402 179451 - Conep17aG0002300.1 Cone17ag0023 455500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0023 1115 Gene3D Transferase(Phosphotransferase) domain 1 900 1112 - -
Cone17ag0023 1115 PRINTS Leucine-rich repeat signature 314 327 - -
Cone17ag0023 1115 PRINTS Leucine-rich repeat signature 671 684 - -
Cone17ag0023 1115 ProSitePatterns Protein kinases ATP-binding region signature. 829 852 IPR017441 GO:0005524(InterPro)
Cone17ag0023 1115 SUPERFAMILY L domain-like 424 740 - -
Cone17ag0023 1115 SMART LRR_typ_2 407 430 IPR003591 -
Cone17ag0023 1115 SMART LRR_typ_2 311 335 IPR003591 -
Cone17ag0023 1115 SMART LRR_typ_2 191 215 IPR003591 -
Cone17ag0023 1115 SMART LRR_typ_2 143 167 IPR003591 -
Cone17ag0023 1115 SMART LRR_typ_2 550 573 IPR003591 -
Cone17ag0023 1115 SMART LRR_typ_2 671 694 IPR003591 -
Cone17ag0023 1115 Pfam Leucine rich repeat 168 228 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Cone17ag0023 1115 Gene3D Ribonuclease Inhibitor 192 354 IPR032675 -
Cone17ag0023 1115 Gene3D Ribonuclease Inhibitor 434 744 IPR032675 -
Cone17ag0023 1115 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 179 235 - -
Cone17ag0023 1115 Pfam Protein kinase domain 826 1096 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0023 1115 Gene3D Phosphorylase Kinase; domain 1 795 899 - -
Cone17ag0023 1115 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Cone17ag0023 1115 FunFam Serine/threonine-protein kinase-like protein CCR4 900 1114 - -
Cone17ag0023 1115 SUPERFAMILY RNI-like 77 421 - -
Cone17ag0023 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0023 1115 SUPERFAMILY Protein kinase-like (PK-like) 809 1099 IPR011009 -
Cone17ag0023 1115 ProSiteProfiles Leucine-rich repeat profile. 552 574 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 258 355 - -
Cone17ag0023 1115 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 456 743 - -
Cone17ag0023 1115 ProSiteProfiles Protein kinase domain profile. 823 1104 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0023 1115 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 356 452 - -
Cone17ag0023 1115 Pfam Leucine Rich Repeat 433 453 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 Pfam Leucine Rich Repeat 313 335 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 Pfam Leucine Rich Repeat 265 287 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 Pfam Leucine Rich Repeat 552 574 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 Pfam Leucine Rich Repeat 145 165 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 Pfam Leucine Rich Repeat 122 143 IPR001611 GO:0005515(InterPro)
Cone17ag0023 1115 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 790 899 - -
Cone17ag0023 1115 SMART serkin_6 823 1097 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0023 1115 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 27 178 - -
Cone17ag0023 1115 Gene3D Ribonuclease Inhibitor 355 433 IPR032675 -
Cone17ag0023 1115 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 331 453 IPR046959 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0023 Cone-Chr17:175402 Cone4ag1513 Cone-Chr4:11756834 1.30E-70 dispersed
Cone20ag1382 Cone-Chr20:8823712 Cone17ag0023 Cone-Chr17:175402 6.93E-56 transposed
Cone20ag1383 Cone-Chr20:8824539 Cone17ag0023 Cone-Chr17:175402 3.12E-103 transposed
Cone17ag0023 Cone-Chr17:175402 Cone20ag1381 Cone-Chr20:8816882 2.04E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82236 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0023 K28089 - cit:102624741 1315.83