Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0025 ATGAGGTCGATTCCACAGCCTGCCGTGGCGGCGAGCAACACCAACTCATCAAACGCAACGCGAACTCGACAGCGTCGGCGTCCAGACCTAACTCTTCCTCTCCCACAGCGAGCCCCTGCCTTGGCGGTGCCGCTTCCCCTGCCTCCCACCAGCTGCCCCTCAGCGCCACCGTCTACGAGTCACCATGGTCAGAATAACTCGGCCGCTGTGCATCAGCTCCAACTCAACTTTTCCGAGCTGGATCGAGCTAATCGAATCGGAAGCGGAAGCGGAGGCACGGTCTACAAGGTGATTCATCGACCTAGTGGTAGTCTCTACGCTCTCAAAGTGATTTACGGAAACCACGAGGACTCTGTGAGGCGCCAGATCTGCAGAGAGATCGAGATCCTACGCGACGTGGATAACCCTAATGTGGTCAGGTGCCATGATATGTTCGACCACAACGGAGAAATCCAGGTCCTCTTGGAATTCATGGATGGAGGTTCCCTGGAAGGTTTCCGCATCGCTAACGAGCAGCATCTCTCGGATCTAACGCGACAGATTCTCACGGGCCTTGCCTATCTCCATCGCCGCCACATCGTTCACCGTGATATCAAGCCTTCCAACCTTCTAATCAACGCTCGCAAGCAGGTTAAGATCGCCGACTTTGGAGTGAGTAGGATTCTGGCGCAGACCATGGATCCTTGCAACTCATCGGTAGGGACAATCGCTTACATGAGTCCAGAGAGAATCAACACAGATCTAAACCAGGGGCAGTACGATGGATATGCTGGAGACATATGGAGTCTGGGAGTGAGCATATTGGAGTTCTATTTGGGGAGGTTTCCATTTGCTGTTGGGAGGCAGGGAGATTGGGCGAGCTTGATGTGTGCAATTTGTATGTCGCAGCCACCAGAAGCGCCGCCTACTGCTTCACCGGAGTTCCGGCACTTTATTGCTTGCTGTTTGCAGAGGGAGCCAGGGAGGAGATGGACCGCTGCTCGGTTGCTGCAACATCCATTCATAATACAGCACAGTGGGAGTGGGAGTGGGAATGGAGTTCATCATCACACGAATCTCCGGCGATTGTTACCTCCTCCACGCCCCCATCCTTTCTCCTAA 1101 54.31 MRSIPQPAVAASNTNSSNATRTRQRRRPDLTLPLPQRAPALAVPLPLPPTSCPSAPPSTSHHGQNNSAAVHQLQLNFSELDRANRIGSGSGGTVYKVIHRPSGSLYALKVIYGNHEDSVRRQICREIEILRDVDNPNVVRCHDMFDHNGEIQVLLEFMDGGSLEGFRIANEQHLSDLTRQILTGLAYLHRRHIVHRDIKPSNLLINARKQVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNQGQYDGYAGDIWSLGVSILEFYLGRFPFAVGRQGDWASLMCAICMSQPPEAPPTASPEFRHFIACCLQREPGRRWTAARLLQHPFIIQHSGSGSGNGVHHHTNLRRLLPPPRPHPFS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 183156 184901 + Conep17aG0002500.1 Cone17ag0025 455502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0025 366 MobiDBLite consensus disorder prediction 39 55 - -
Cone17ag0025 366 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524(InterPro)
Cone17ag0025 366 SUPERFAMILY Protein kinase-like (PK-like) 81 339 IPR011009 -
Cone17ag0025 366 MobiDBLite consensus disorder prediction 1 21 - -
Cone17ag0025 366 MobiDBLite consensus disorder prediction 1 66 - -
Cone17ag0025 366 SMART serkin_6 80 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0025 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0025 366 FunFam Mitogen-activated protein kinase 2 160 345 - -
Cone17ag0025 366 Gene3D Transferase(Phosphotransferase) domain 1 160 348 - -
Cone17ag0025 366 Pfam Protein kinase domain 83 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0025 366 FunFam Mitogen-activated protein kinase 2 60 159 - -
Cone17ag0025 366 ProSiteProfiles Protein kinase domain profile. 80 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0025 366 MobiDBLite consensus disorder prediction 341 366 - -
Cone17ag0025 366 Gene3D Phosphorylase Kinase; domain 1 57 159 - -
Cone17ag0025 366 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 66 339 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cone17ag0025 366 CDD PKc_MAPKK_plant_like 78 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0025 Cone-Chr17:183156 Cone2ag0738 Cone-Chr2:33145279 4.15E-97 dispersed
Cone17ag0025 Cone-Chr17:183156 Cone20ag1378 Cone-Chr20:8798189 7.37E-228 wgd
Cone17ag0025 Cone-Chr17:183156 Cone4ag0888 Cone-Chr4:6361613 7.43E-167 wgd
Cone17ag0025 Cone-Chr17:183156 Cone7ag0824 Cone-Chr7:6143218 1.85E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82238 PF02485 Branch 3.20E-51 CL0110 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0025 K13413 - sly:543946 482.641