Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0026 ATGGGATCCATAGAGGAGAAAACAGACCTGGAATCTGACGAGAAGGTCCTTCTTGGTTCATCAACATCCCCCAGAAAAGGGCTTGTCTTTGATTTTGAGACGATTCATGTACATTCACGTTCAGATTCATTCAACTCATGGACTTCTGAGCATATAAAGAGAGGGCCTTTTCGTTCTGTTTATTATGTCTTAATTAAAGCGAAGATCAACACGTTGCTACCCTTTGGTCCATTGGCGATTTTGCTGCATTATTTAACTGGAAAACACGTAGGATGGGTGTTCTTCTTCACATTATTGGGAATCATTCCTTTAGCGGAGCGCCTGGGTTATGCAACTGAGCAGCTAGCATTCTACACTGGCCCGACAGTTGGGGGTCTTTTGAATGCTACATTTGGAAATGCAACGGAGATGATTATATCAATATATGCACTGAAAAGTGGGATGACTAGGGTTGTTCAGCAATCTTTACTGGGGTCAATCTTGTCGAACATGCTTCTAGTGCTTGGTTGTGCCTTCTTCACTGGCGGGGTCACTCATTATGAGAAGAATCAGACTTTCAATAAGGCAGCTGCCCTTGTGAATTCCGGATTGCTATTGATGGCCGTAATGGGATTAATGTTTCCAGCTGTGCTTCATTTTACTCACTCTGAAGTACACTTTGGGAAGTCAGAATTAGCACTTTCAAGATTTAGCAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAAAAGTCAACAGAAGCTTAGTGAGTCCACTGACATGGAAAGAGACAATAATGAAGATTCAGATGATGAAGAGGCTCCTGAGATAACTCAGTGGGAAGCAATAGGATGGCTGGCTATTTTGACTGTCTGGGTGTCGATCTTATCTGGATACCTAGTTGATGCCATTCAGGGAGCATCTGACTCTCTAAACATGCCAGTGGCTTTTATTAGTGTCATCTTACTTCCAATTGTCGGTAATGCTGCCGAACATGCCAGCGCTATTATGTTTGCGATGAAAGATAAGCTTGACATCACACTTGGAGTTGCTATCGGATCATCTACCCAAATATCTATGTTTGTGATTCCATTCTGTGTAGTCATTGGGTGGTTCATGGGAAAACCGATGGACTTGAATTTTCAACTTTTTGAGACTGCTACTCTATTCATCACTGTGATTGTGGTGGCTTTTATGTTGCAGGAAGGGACATCAAACTATTTTAAAGGCTTGATGCTTTTATTATGCTATCTCATTGTAGCAGCAAGTTTCTTCGTCCACATTGACCCAACAGACACTACAGCCGATGGAAATTAA 1311 41.88 MGSIEEKTDLESDEKVLLGSSTSPRKGLVFDFETIHVHSRSDSFNSWTSEHIKRGPFRSVYYVLIKAKINTLLPFGPLAILLHYLTGKHVGWVFFFTLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMTRVVQQSLLGSILSNMLLVLGCAFFTGGVTHYEKNQTFNKAAALVNSGLLLMAVMGLMFPAVLHFTHSEVHFGKSELALSRFSSCIMLVAYASYLFFQLKSQQKLSESTDMERDNNEDSDDEEAPEITQWEAIGWLAILTVWVSILSGYLVDAIQGASDSLNMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWFMGKPMDLNFQLFETATLFITVIVVAFMLQEGTSNYFKGLMLLLCYLIVAASFFVHIDPTDTTADGN 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 185953 190701 + Conep17aG0002600.1 Cone17ag0026 455503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0026 436 Gene3D - 268 424 IPR044880 -
Cone17ag0026 436 Gene3D - 121 258 IPR044880 -
Cone17ag0026 436 Pfam Sodium/calcium exchanger protein 92 247 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0026 436 Pfam Sodium/calcium exchanger protein 280 422 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0026 436 FunFam Vacuolar cation/proton exchanger 268 424 - -
Cone17ag0026 436 FunFam Vacuolar cation/proton exchanger 121 260 - -
Cone17ag0026 436 NCBIfam calcium/proton exchanger 72 423 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cone17ag0026 436 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 428 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0026 Cone-Chr17:185953 Cone3ag0420 Cone-Chr3:2063062 8.49E-113 dispersed
Cone11ag0475 Cone-Chr11:2399847 Cone17ag0026 Cone-Chr17:185953 2.40E-192 transposed
Cone8ag1353 Cone-Chr8:10849714 Cone17ag0026 Cone-Chr17:185953 2.62E-188 transposed
Cone17ag0026 Cone-Chr17:185953 Cone20ag1377 Cone-Chr20:8792808 8.58E-303 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0026 K07300 - mdm:103405205 689.878