Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0028 ATGGCTGAAGATCTTGATAGACCATTGCTGGATCCCGAGAATTTCAACCGGGATGGGATTGATCTGGAACGCTTACCATTGGAAGAAGTCTTTGAACAACTAAGAACATCACCACGTGGACTTTCTTCAGAAGATGCTCAGATTCGATTGCAGATTTTCGGCCACAACAAACTTGAAGAAAAGCCAGAAAACAAAATTTTGAAATTTCTTAGTTTCATGTGGAATCCCCTGTCATGGGTTATGGAAGCTGCAGCAATAATGGCAATCATCCTTGCAAATGGCGGAGGACAAGGTCCAGACTGGCAGGATTTTGTGGGAATTGTTTGTCTGCTTATAATTAACTCCACAATTAGTTTCATCGAAGAAAACAATGCTGGAAATGCCGCAGCATCCCTTATGGCCCATTTAGCTCCAAAAACAAAGGTTCTAAGAGATGGGCAATGGCAAGAGCAAGATGCTGCAATTTTAGTACCGGGCGATATAATAAGCATAAAGCTCGGAGATATCATCCCGGCTGATGCCCGCCTGCTTGAAGGTGATCCCCTCAAAATTGACCAGTCGGCTCTTACAGGAGAATCTCTGCCTGTGACCAGAAAGACTGGAGATGAAGTGTTTTCAGGGTCAACATGTAAACATGGAGAGATTGAAGCCGTAGTTATAGCAACTGGAGTTCATTCCTTCTTTGGCAAGGCAGCTCATTTAGTTGACTCTACTGAAGTTGTTGGGCATTTCCAGCAGGTCCTTACAGCGATTGGGAACTTCTGCATTTGCTCTATAGCGGTAGGCATGATTCTGGAAATCATTGTCATGTTCCCTATACAGCAAAGATCATACAGAGACGGAATAAATAATCTTCTTGTTCTATTAATAGGAGGAATCCCTATCGCTATGCCTACAGTCTTATCTGTCACACTTGCTATTGGTTCTCATCGTCTCTCCCAACAGGGTGCTATCACAAAGAGAATGACGGCCATAGAAGAGATGGCCGGAATGGATGTTCTCTGTAGTGATAAACAGGAACTCTTACCCTGA 1032 43.6 MAEDLDRPLLDPENFNRDGIDLERLPLEEVFEQLRTSPRGLSSEDAQIRLQIFGHNKLEEKPENKILKFLSFMWNPLSWVMEAAAIMAIILANGGGQGPDWQDFVGIVCLLIINSTISFIEENNAGNAAASLMAHLAPKTKVLRDGQWQEQDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTRKTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEVVGHFQQVLTAIGNFCICSIAVGMILEIIVMFPIQQRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKQELLP 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 197752 199538 + Conep17aG0002800.1 Cone17ag0028 455505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0028 343 SUPERFAMILY Calcium ATPase, transduction domain A 138 235 IPR008250 -
Cone17ag0028 343 SMART Cation_ATPase_N_a_2 21 93 IPR004014 -
Cone17ag0028 343 Pfam Cation transporter/ATPase, N-terminus 24 87 IPR004014 -
Cone17ag0028 343 Gene3D - 100 331 - -
Cone17ag0028 343 NCBIfam HAD-IC family P-type ATPase 107 338 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0028 343 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 330 IPR023298 -
Cone17ag0028 343 Gene3D - 138 222 - -
Cone17ag0028 343 PANTHER CALCIUM-TRANSPORTING ATPASE 24 340 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cone17ag0028 343 Pfam E1-E2 ATPase 136 314 - -
Cone17ag0028 343 FunFam Plasma membrane ATPase 138 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0028 Cone-Chr17:197752 Cone18ag1289 Cone-Chr18:9012121 3.09E-192 dispersed
Cone17ag0028 Cone-Chr17:197752 Cone20ag1374 Cone-Chr20:8781569 1.47E-230 wgd
Cone17ag0028 Cone-Chr17:197752 Cone4ag0845 Cone-Chr4:5646225 3.94E-221 wgd
Cone17ag0028 Cone-Chr17:197752 Cone7ag0825 Cone-Chr7:6158954 4.49E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0028 K01535 - vvi:100265284 616.69