Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0029 ATGGAGGTTTTCAATAAAGACATGGACAAAGATACAGTTGTTTTACTGGCAGCTAGAGCAGCAAGACTTGAAAATCAAGATGCTATAGATGCAGCAATTGTTAACATGCTTAGCGATCCAAAGGAGGCACGTGCAAATATTACAGAAGTGCACTTTCTGCCTTTCAATCCAGTGGACAAACGTACTGCAATTACATATATCGACTCTGAGGGAAACTGGCATCAAGCCACTAAAGGAGCTCCTGAGCAGATTCTAGATCTATGCCGAGAAAAAGATCAGATTGCTGAAAAAGTGCACACCATCATTGACAAATTTGCTGAACGTGGCTTGAGATCTCTTGCAGTTGCTTATCAGTCAGTTCCAGAAAAGAGTAAGGACAGTCCAGGGGATGCATGGACATTTGTTGGGCTGTTGGCTCTGTTTGATCCTCCGAGACATGATAGCGCTGAGACCATCCGTAGAGCACTTAACCTTGGAGTCAATGTCAAAATGATTACAGGGGACCAATTGGCAATTGCAAAGGAGACAGGACGACGACTTGGAATGGGTACAAACATGTACCCATCATCTACACTATTGGGACGTGAAAAAGATGAACATGAAGCTCTTCCAATAGACGAGCTCATTGAAAAGGCAGATGGCTTTGCTGGTGTATTCCCTGAGCATAAGTATGAGATCGTGAAAATTTTACAAGAAAAGAAGCATGTTGTTGGAATGACGGGAGATGGAGTGAATGATGCACCAGCTTTGAAGAAGGCAGATATTGGTATAGCAGTGGCAGATGCTACTGATGCTGCAAGAAGTGCATCTGATATTGTCCTAACTGAGCCTGGCTTAAGTGTCATTGTCAGTGCTGTCTTAACTAGCCGAGCTATCTTCCAAAGAATGAAGAACTATACAATATATGCTGTCTCAATTACCATTAGGATTGTGCTTGGTTTTGTGCTACTAGCATTAATATGGGAATATGATTTCCCTCCTTTCATGGTTCTGATTGTAGCAATACTTAATGATGGAACCATCATGACTATATCACAAGATCGGGTAAAGCCATCTCCAATGCCCGATAGTTGGAAGCTTAACGAGATATTTGCTACCGGAATTGTAATTGGCACCTATCTTGCTCTTGTCACTGTCCTCTTTTACTGGATTATTGTGGACACCACTTTCTTTGAGGACCACTTCAACGTGGAATCACTATCCAGCGACAGTGAGCAAGTCTCATCTGCTGTATATCTGCAAGTTAGCATCATCAGTCAGGCTCTCATATTTGTGACTAGAAGTCAAAGTTGGTCGTTTCTAGAACGACCCGGAACACTTTTGATGATTGCCTTTGTCGTGGCTCAGCTGGTGGCTACCTTAATTTCTGTGTATGCAAATATAAGTTTTGCTTACATAAGTGGCATTGGATGGGGATGGGCTGGGGTTATATGGTTATATAGCTTGGTCTTCTACGTACCGCTTGATATCATTAAGTTCATAGTTCGCTACGCATTGAGTGGAGAAGCATGGAATCTAGTTTTTGACAGAAAGACAGCCTTTGCTTCCAAGAATGACTACAGGAAGGAAGACAGGGCAGCAAAGTGGGTACTTTCTCAAAGAAGTCTTCAGGGGTTGCTGTCTGTAGATTTGAATGTGCATGCAAGACGATCTTCTTTGATTGCTGAACAGGCCAAGCGGCGAGCCGAAATTGCCAGGATCGGGGAAATACACACTCTTAAAGGACATGTAGAATCTGTAGTGAGGCTAAAGAATCTGGATTCATTTCAATTAGCTCATACTGTATGA 1788 42.62 MEVFNKDMDKDTVVLLAARAARLENQDAIDAAIVNMLSDPKEARANITEVHFLPFNPVDKRTAITYIDSEGNWHQATKGAPEQILDLCREKDQIAEKVHTIIDKFAERGLRSLAVAYQSVPEKSKDSPGDAWTFVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSTLLGREKDEHEALPIDELIEKADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIVAILNDGTIMTISQDRVKPSPMPDSWKLNEIFATGIVIGTYLALVTVLFYWIIVDTTFFEDHFNVESLSSDSEQVSSAVYLQVSIISQALIFVTRSQSWSFLERPGTLLMIAFVVAQLVATLISVYANISFAYISGIGWGWAGVIWLYSLVFYVPLDIIKFIVRYALSGEAWNLVFDRKTAFASKNDYRKEDRAAKWVLSQRSLQGLLSVDLNVHARRSSLIAEQAKRRAEIARIGEIHTLKGHVESVVRLKNLDSFQLAHTV 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 199565 202595 + Conep17aG0002900.1 Cone17ag0029 455506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0029 595 FunFam Plasma membrane ATPase 1 141 - -
Cone17ag0029 595 Gene3D - 2 141 IPR023299 GO:0000166(InterPro)
Cone17ag0029 595 Gene3D - 278 466 - -
Cone17ag0029 595 Gene3D - 549 594 - -
Cone17ag0029 595 SUPERFAMILY Calcium ATPase, transmembrane domain M 289 499 IPR023298 -
Cone17ag0029 595 NCBIfam plasma-membrane proton-efflux P-type ATPase 4 458 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cone17ag0029 595 PRINTS P-type cation-transporting ATPase superfamily signature 158 168 - -
Cone17ag0029 595 PRINTS P-type cation-transporting ATPase superfamily signature 240 259 - -
Cone17ag0029 595 PRINTS P-type cation-transporting ATPase superfamily signature 263 275 - -
Cone17ag0029 595 PRINTS P-type cation-transporting ATPase superfamily signature 136 147 - -
Cone17ag0029 595 PANTHER CALCIUM-TRANSPORTING ATPASE 3 526 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cone17ag0029 595 Gene3D - 142 277 IPR023214 -
Cone17ag0029 595 SUPERFAMILY HAD-like 132 286 IPR036412 -
Cone17ag0029 595 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 23 147 IPR023299 GO:0000166(InterPro)
Cone17ag0029 595 Pfam haloacid dehalogenase-like hydrolase 89 254 - -
Cone17ag0029 595 PRINTS H+-transporting ATPase (proton pump) signature 98 116 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0029 595 PRINTS H+-transporting ATPase (proton pump) signature 271 296 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0029 595 PRINTS H+-transporting ATPase (proton pump) signature 412 433 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0029 595 PRINTS H+-transporting ATPase (proton pump) signature 212 228 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0029 595 PRINTS H+-transporting ATPase (proton pump) signature 240 256 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone17ag0029 595 FunFam Plasma membrane ATPase 133 288 - -
Cone17ag0029 595 FunFam ATPase 4 plasma membrane-type 228 467 - -
Cone17ag0029 595 NCBIfam HAD-IC family P-type ATPase 215 325 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0029 Cone-Chr17:199565 Cone7ag0825 Cone-Chr7:6158954 0 dispersed
Cone17ag0029 Cone-Chr17:199565 Cone20ag1374 Cone-Chr20:8781569 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0029 K01535 - mdm:114822601 1001.5