Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0031 ATGAAGAGTTGGAAATGGAGGTGGGTTTTGTTTCTGATGAGCATTAACATTTTGTGGTGGAAGCCCAGTTCCATCAATGCAGAAACGGATCCAAATGATGCTTCTGCTCTTAAGGTCTTGTACACTAGCTTAAACTCGCCATCTCAATTAACACAATGGAGTTCAAATGGTGATGATCCGTGCGGACAGTCTTGGAAAGGCGTAATTTGCTCAGGCTCACGGGTTACCGAAATTACATTGTCTGGTCTTGGACTTTCTGGATCACTAGGGTACCAGCTCACAAGTTTGACATCTTTAACGAACCTGGACATGAGCAATAACAATCTTGGAGGCGAGATCTCTTACCAACTCCCACCAAATCTACAGCTCTTAAATCTTGCTCGTAATAACTTCAGTAAAGGCATCCCTTACTCAGTTTCTCAGATGGTGCAGCTGGAATATTTAAATCTCAGCCATAATCAGCTTCAAGGTCCACTTTCTGATATATTTGGAAAGCTTTCATCACTCTCCACATTGGATCTCTCTTATAATTTGCTGTCAGGCAACCTACCTGGGAGTTTCAGCTCCCTTTCGAGTATTTACACATTATATTTGCAAGATAATCAGTTCACAGGCACTATTAATGTCCTTACTAATCTTCCCCTTCAAAATCTGAATGTTGGAAACAACCATTTTACCGGCTCGGTTCCTGACCACTTGCAGAACATAAACCTTCAGAAGAAAGGTAATTCTTGGAATTCGGATCCTACGCCCCATACTCCACCTGGTACACCCACATCTACTTCTCGGAATAATACGGGAAGAACAGGTGGTAGAGGTGGTAGAGGTGGAGAAAAAGGAGGTGGAGTAATTGCAGGAGTTGTTGTAACTATATTCATAGTTGGAGCAATAGTAACATTCTTTCTTATAAAGAGAAAATCCAAGAAATCAGGCTTAGACGTAGAAAAGCTCGAGGATCGACCTTTCGTACCGCTTAATTTGAAAGAAGTACATGAAATGAAGTCTGCAGAGGTTTCCTCAAAGACATTTGATACTTGTGGCACAATAAATCTTAAACCCCCACCAATGAAATCATATGATGAGGAATATTTCTTGAAAAAATCCGTACTTGTCAAAAAGGCTAGTATAGCTCCTATAAATGTACATTCATATTCATTAGCTGAATTGCAGATTTCTACAAGAAATTTCAGTCCAGAAAATCTTCTTGACGAGGGGTCACTTGGACGTGTTTATCGGGCTCAGTTTACTGATGGGAAGGTGTTTGCTGTGAAGAAGATAGATTCATCTGCACTTCCAATGGAATTGCTGGAGGATTTCACAAAGATGGTGTCGAAAGTGTCTCAATTGCACCATGCTAATATAACGGAGCTCATTGGTTATTGCTCGGAGTATGGACAGAATCTTTTAGTGTATGAATACCATGAAAACAGTTCATTGCACGACTTCTTGCATCTCTCAGACGAATTTAGCAACCCCTTGACATGGAATTCTCGTATCAAGATCGCTTTGGGGACTGGACGTGCATTGGAGTATTTACATGAAGTTTGTTCGCCATCAATTGTTCATAACAATATCAAGTCAGCTAACATATTACTTGATATGGAACTCAACCCTCAGCTTTCCGATTCCGGCCTGGCAAGTTTCATGGCAAATGTGGATCTGAGTACTGGATTTGGATACAATGCTCCTGAGGTTACAATGTGTGCTCAATATACTCTCAAAAGTGACGTATATAGTTTTGGCATAGTCATGTTAGAGCTGCTCACCGGACGTAAACCGTTTGATAGTTCAAGGGTAAGACCTGAGCAATCCTTGGTTCGGTGGGCAACACCTCAGCTCCATGACATTGATGCTTTGGAAAAAATGGTTGATCCCATACTCAAAGGGCTCTACCCTGTTAAGTCTCTCTCCCGTTTTGCCGATGTAATTGCTCTCTGTGTCCAGCCGGAGCCTGAATTTCGACCTCCTATGTCAGAAGTTGTACAAGCATTGGTCCGGCTCGTTGCAACGAGCTAA 2016 41.82 MKSWKWRWVLFLMSINILWWKPSSINAETDPNDASALKVLYTSLNSPSQLTQWSSNGDDPCGQSWKGVICSGSRVTEITLSGLGLSGSLGYQLTSLTSLTNLDMSNNNLGGEISYQLPPNLQLLNLARNNFSKGIPYSVSQMVQLEYLNLSHNQLQGPLSDIFGKLSSLSTLDLSYNLLSGNLPGSFSSLSSIYTLYLQDNQFTGTINVLTNLPLQNLNVGNNHFTGSVPDHLQNINLQKKGNSWNSDPTPHTPPGTPTSTSRNNTGRTGGRGGRGGEKGGGVIAGVVVTIFIVGAIVTFFLIKRKSKKSGLDVEKLEDRPFVPLNLKEVHEMKSAEVSSKTFDTCGTINLKPPPMKSYDEEYFLKKSVLVKKASIAPINVHSYSLAELQISTRNFSPENLLDEGSLGRVYRAQFTDGKVFAVKKIDSSALPMELLEDFTKMVSKVSQLHHANITELIGYCSEYGQNLLVYEYHENSSLHDFLHLSDEFSNPLTWNSRIKIALGTGRALEYLHEVCSPSIVHNNIKSANILLDMELNPQLSDSGLASFMANVDLSTGFGYNAPEVTMCAQYTLKSDVYSFGIVMLELLTGRKPFDSSRVRPEQSLVRWATPQLHDIDALEKMVDPILKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVATS 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 205759 209409 + Conep17aG0003100.1 Cone17ag0031 455508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0031 671 PRINTS Leucine-rich repeat signature 99 112 - -
Cone17ag0031 671 PRINTS Leucine-rich repeat signature 166 179 - -
Cone17ag0031 671 MobiDBLite consensus disorder prediction 239 279 - -
Cone17ag0031 671 Gene3D Ribonuclease Inhibitor 30 257 IPR032675 -
Cone17ag0031 671 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 474 671 - -
Cone17ag0031 671 Gene3D Transferase(Phosphotransferase) domain 1 475 671 - -
Cone17ag0031 671 Pfam Leucine rich repeat 161 203 IPR001611 GO:0005515(InterPro)
Cone17ag0031 671 Pfam Protein kinase domain 401 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0031 671 SUPERFAMILY L domain-like 29 235 - -
Cone17ag0031 671 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 360 473 - -
Cone17ag0031 671 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 163 666 IPR046959 -
Cone17ag0031 671 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Cone17ag0031 671 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Cone17ag0031 671 Gene3D Phosphorylase Kinase; domain 1 361 473 - -
Cone17ag0031 671 ProSiteProfiles Protein kinase domain profile. 396 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0031 671 SMART LRR_typ_2 142 165 IPR003591 -
Cone17ag0031 671 SMART LRR_typ_2 166 189 IPR003591 -
Cone17ag0031 671 SMART LRR_typ_2 96 123 IPR003591 -
Cone17ag0031 671 Pfam Leucine Rich Repeat 98 115 IPR001611 GO:0005515(InterPro)
Cone17ag0031 671 Pfam Leucine Rich Repeat 215 235 IPR001611 GO:0005515(InterPro)
Cone17ag0031 671 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515(InterPro)
Cone17ag0031 671 SUPERFAMILY Protein kinase-like (PK-like) 377 664 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0031 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0031 Cone-Chr17:205759 Cone4ag0853 Cone-Chr4:5700963 2.65E-230 dispersed
Cone17ag0031 Cone-Chr17:205759 Cone20ag1372 Cone-Chr20:8777652 4.95E-71 wgd
Cone17ag0031 Cone-Chr17:205759 Cone7ag0827 Cone-Chr7:6173636 2.19E-237 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone17ag0031 . 384 668 Strubbelig Receptor Gene Family AT1G11130 53.0 1.5e-81 301.6
Cone4ag0853 . 404 690 Strubbelig Receptor Gene Family AT1G11130 51.6 8.0e-80 295.8
Cone8ag1487 . 21 665 Strubbelig Receptor Gene Family AT2G20850 50.3 9.1e-134 474.9
Cone19ag0495 . 2 741 Strubbelig Receptor Gene Family AT5G06820 52.6 1.3e-184 644.0
Cone8ag1487 . 31 789 Strubbelig Receptor Gene Family AT4G03390 61.9 2.4e-205 713.0
Cone12ag1436 . 31 777 Strubbelig Receptor Gene Family AT4G03390 60.9 6.9e-205 711.4
Cone6ag1064 . 28 731 Strubbelig Receptor Gene Family AT4G03390 53.4 3.7e-166 582.8
Cone9ag1056 . 28 731 Strubbelig Receptor Gene Family AT4G03390 52.8 5.9e-164 575.5
Cone4ag0869 . 19 679 Strubbelig Receptor Gene Family AT3G13065 55.8 1.3e-149 527.7
Cone4ag0853 . 12 690 Strubbelig Receptor Gene Family AT3G13065 50.2 3.9e-111 399.8
Cone17ag0031 . 23 668 Strubbelig Receptor Gene Family AT3G13065 51.0 3.9e-111 399.8
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT3G13065 52.3 1.6e-80 298.1
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT3G13065 50.9 2.6e-78 290.8
Cone4ag0869 . 21 700 Strubbelig Receptor Gene Family AT1G78980 63.8 1.1e-193 674.1
Cone7ag0827 . 30 667 Strubbelig Receptor Gene Family AT1G78980 50.1 6.1e-136 482.3
Cone4ag0853 . 30 695 Strubbelig Receptor Gene Family AT1G78980 52.6 2.6e-134 476.9
Cone17ag0031 . 25 671 Strubbelig Receptor Gene Family AT1G78980 51.8 4.7e-128 456.1
Cone4ag0853 . 3 719 Strubbelig Receptor Gene Family AT1G53730 64.8 2.1e-208 723.0
Cone7ag0827 . 1 691 Strubbelig Receptor Gene Family AT1G53730 61.2 4.7e-208 721.8
Cone17ag0031 . 5 668 Strubbelig Receptor Gene Family AT1G53730 57.4 7.2e-164 575.1
Cone1ag0021 . 1 659 Strubbelig Receptor Gene Family AT1G53730 52.5 1.4e-156 550.8
Cone4ag0869 . 11 699 Strubbelig Receptor Gene Family AT1G53730 51.0 8.8e-154 541.6
Cone7ag0827 . 10 679 Strubbelig Receptor Gene Family AT3G14350 59.6 4.6e-184 642.1
Cone4ag0853 . 13 707 Strubbelig Receptor Gene Family AT3G14350 60.2 6.6e-183 638.3
Cone20ag1372 . 25 168 Strubbelig Receptor Gene Family AT3G14350 69.4 8.4e-45 179.5
Cone1ag0021 . 103 674 Strubbelig Receptor Gene Family AT4G22130 63.5 8.0e-187 651.0
Cone5ag1846 . 150 746 Strubbelig Receptor Gene Family AT4G22130 60.4 1.6e-179 626.7
Cone7ag0827 . 367 682 Strubbelig Receptor Gene Family AT4G22130 65.3 5.1e-117 419.1
Cone4ag0853 . 395 710 Strubbelig Receptor Gene Family AT4G22130 65.3 1.9e-116 417.2
Cone17ag0031 . 329 668 Strubbelig Receptor Gene Family AT4G22130 59.2 7.9e-110 395.2
Cone8ag1487 . 482 783 Strubbelig Receptor Gene Family AT4G22130 61.7 2.4e-106 383.6
Cone12ag1436 . 468 769 Strubbelig Receptor Gene Family AT4G22130 61.1 1.3e-104 377.9
Cone4ag0869 . 367 700 Strubbelig Receptor Gene Family AT4G22130 53.5 6.7e-101 365.5
Cone6ag1064 . 448 731 Strubbelig Receptor Gene Family AT4G22130 61.0 5.3e-98 355.9
Cone9ag1056 . 448 731 Strubbelig Receptor Gene Family AT4G22130 59.6 1.9e-95 347.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82239 PF01602 Adaptin_N 2.50E-91 CL0020 Cone PK