Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0031 ATGAAGAGTTGGAAATGGAGGTGGGTTTTGTTTCTGATGAGCATTAACATTTTGTGGTGGAAGCCCAGTTCCATCAATGCAGAAACGGATCCAAATGATGCTTCTGCTCTTAAGGTCTTGTACACTAGCTTAAACTCGCCATCTCAATTAACACAATGGAGTTCAAATGGTGATGATCCGTGCGGACAGTCTTGGAAAGGCGTAATTTGCTCAGGCTCACGGGTTACCGAAATTACATTGTCTGGTCTTGGACTTTCTGGATCACTAGGGTACCAGCTCACAAGTTTGACATCTTTAACGAACCTGGACATGAGCAATAACAATCTTGGAGGCGAGATCTCTTACCAACTCCCACCAAATCTACAGCTCTTAAATCTTGCTCGTAATAACTTCAGTAAAGGCATCCCTTACTCAGTTTCTCAGATGGTGCAGCTGGAATATTTAAATCTCAGCCATAATCAGCTTCAAGGTCCACTTTCTGATATATTTGGAAAGCTTTCATCACTCTCCACATTGGATCTCTCTTATAATTTGCTGTCAGGCAACCTACCTGGGAGTTTCAGCTCCCTTTCGAGTATTTACACATTATATTTGCAAGATAATCAGTTCACAGGCACTATTAATGTCCTTACTAATCTTCCCCTTCAAAATCTGAATGTTGGAAACAACCATTTTACCGGCTCGGTTCCTGACCACTTGCAGAACATAAACCTTCAGAAGAAAGGTAATTCTTGGAATTCGGATCCTACGCCCCATACTCCACCTGGTACACCCACATCTACTTCTCGGAATAATACGGGAAGAACAGGTGGTAGAGGTGGTAGAGGTGGAGAAAAAGGAGGTGGAGTAATTGCAGGAGTTGTTGTAACTATATTCATAGTTGGAGCAATAGTAACATTCTTTCTTATAAAGAGAAAATCCAAGAAATCAGGCTTAGACGTAGAAAAGCTCGAGGATCGACCTTTCGTACCGCTTAATTTGAAAGAAGTACATGAAATGAAGTCTGCAGAGGTTTCCTCAAAGACATTTGATACTTGTGGCACAATAAATCTTAAACCCCCACCAATGAAATCATATGATGAGGAATATTTCTTGAAAAAATCCGTACTTGTCAAAAAGGCTAGTATAGCTCCTATAAATGTACATTCATATTCATTAGCTGAATTGCAGATTTCTACAAGAAATTTCAGTCCAGAAAATCTTCTTGACGAGGGGTCACTTGGACGTGTTTATCGGGCTCAGTTTACTGATGGGAAGGTGTTTGCTGTGAAGAAGATAGATTCATCTGCACTTCCAATGGAATTGCTGGAGGATTTCACAAAGATGGTGTCGAAAGTGTCTCAATTGCACCATGCTAATATAACGGAGCTCATTGGTTATTGCTCGGAGTATGGACAGAATCTTTTAGTGTATGAATACCATGAAAACAGTTCATTGCACGACTTCTTGCATCTCTCAGACGAATTTAGCAACCCCTTGACATGGAATTCTCGTATCAAGATCGCTTTGGGGACTGGACGTGCATTGGAGTATTTACATGAAGTTTGTTCGCCATCAATTGTTCATAACAATATCAAGTCAGCTAACATATTACTTGATATGGAACTCAACCCTCAGCTTTCCGATTCCGGCCTGGCAAGTTTCATGGCAAATGTGGATCTGAGTACTGGATTTGGATACAATGCTCCTGAGGTTACAATGTGTGCTCAATATACTCTCAAAAGTGACGTATATAGTTTTGGCATAGTCATGTTAGAGCTGCTCACCGGACGTAAACCGTTTGATAGTTCAAGGGTAAGACCTGAGCAATCCTTGGTTCGGTGGGCAACACCTCAGCTCCATGACATTGATGCTTTGGAAAAAATGGTTGATCCCATACTCAAAGGGCTCTACCCTGTTAAGTCTCTCTCCCGTTTTGCCGATGTAATTGCTCTCTGTGTCCAGCCGGAGCCTGAATTTCGACCTCCTATGTCAGAAGTTGTACAAGCATTGGTCCGGCTCGTTGCAACGAGCTAA 2016 41.82 MKSWKWRWVLFLMSINILWWKPSSINAETDPNDASALKVLYTSLNSPSQLTQWSSNGDDPCGQSWKGVICSGSRVTEITLSGLGLSGSLGYQLTSLTSLTNLDMSNNNLGGEISYQLPPNLQLLNLARNNFSKGIPYSVSQMVQLEYLNLSHNQLQGPLSDIFGKLSSLSTLDLSYNLLSGNLPGSFSSLSSIYTLYLQDNQFTGTINVLTNLPLQNLNVGNNHFTGSVPDHLQNINLQKKGNSWNSDPTPHTPPGTPTSTSRNNTGRTGGRGGRGGEKGGGVIAGVVVTIFIVGAIVTFFLIKRKSKKSGLDVEKLEDRPFVPLNLKEVHEMKSAEVSSKTFDTCGTINLKPPPMKSYDEEYFLKKSVLVKKASIAPINVHSYSLAELQISTRNFSPENLLDEGSLGRVYRAQFTDGKVFAVKKIDSSALPMELLEDFTKMVSKVSQLHHANITELIGYCSEYGQNLLVYEYHENSSLHDFLHLSDEFSNPLTWNSRIKIALGTGRALEYLHEVCSPSIVHNNIKSANILLDMELNPQLSDSGLASFMANVDLSTGFGYNAPEVTMCAQYTLKSDVYSFGIVMLELLTGRKPFDSSRVRPEQSLVRWATPQLHDIDALEKMVDPILKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVATS 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 205759 209409 + Conep17aG0003100.1 Cone17ag0031 455508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0031 671 PRINTS Leucine-rich repeat signature 99 112 - -
Cone17ag0031 671 PRINTS Leucine-rich repeat signature 166 179 - -
Cone17ag0031 671 MobiDBLite consensus disorder prediction 239 279 - -
Cone17ag0031 671 Gene3D Ribonuclease Inhibitor 30 257 IPR032675 -
Cone17ag0031 671 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 474 671 - -
Cone17ag0031 671 Gene3D Transferase(Phosphotransferase) domain 1 475 671 - -
Cone17ag0031 671 Pfam Leucine rich repeat 161 203 IPR001611 GO:0005515(InterPro)
Cone17ag0031 671 Pfam Protein kinase domain 401 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0031 671 SUPERFAMILY L domain-like 29 235 - -
Cone17ag0031 671 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 360 473 - -
Cone17ag0031 671 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 163 666 IPR046959 -
Cone17ag0031 671 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Cone17ag0031 671 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Cone17ag0031 671 Gene3D Phosphorylase Kinase; domain 1 361 473 - -
Cone17ag0031 671 ProSiteProfiles Protein kinase domain profile. 396 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0031 671 SMART LRR_typ_2 142 165 IPR003591 -
Cone17ag0031 671 SMART LRR_typ_2 166 189 IPR003591 -
Cone17ag0031 671 SMART LRR_typ_2 96 123 IPR003591 -
Cone17ag0031 671 Pfam Leucine Rich Repeat 98 115 IPR001611 GO:0005515(InterPro)
Cone17ag0031 671 Pfam Leucine Rich Repeat 215 235 IPR001611 GO:0005515(InterPro)
Cone17ag0031 671 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515(InterPro)
Cone17ag0031 671 SUPERFAMILY Protein kinase-like (PK-like) 377 664 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0031 Cone-Chr17:205759 Cone4ag0853 Cone-Chr4:5700963 2.65E-230 dispersed
Cone17ag0031 Cone-Chr17:205759 Cone20ag1372 Cone-Chr20:8777652 4.95E-71 wgd
Cone17ag0031 Cone-Chr17:205759 Cone7ag0827 Cone-Chr7:6173636 2.19E-237 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82239 PF01602 Adaptin_N 2.50E-91 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0031 - - - 0.0