Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0033 ATGGCTCGCCTTAAGGAGTTCATTAAAAACAAGAAGCTCTTCTTAGCTTCACTCTCCGCTCTACTCATCGTTGCAGTCATAATCGGCATCGTCGTCGGAGTCAACTCCCGCGACAAAAATTCCGACAACTCTCCCGGCCATTCCATCGTCAAAAACTCATGCAGCTCCACCCTGTACCCAGCTCTATGTTACTCCACAATTTCCTCCAACCTCGACGCAGCCACAAAACCCATCTCCACCAAGAAAGACCTTATAGAACTCGCCATAAACGCCACGACAAAAGTCGTCCAACAAAACTACTACGGCATCAAGAAGCTCACTACACTCACGAACCTGACCAAGAGAGAGAAAAGCGCTCTCCACGACTGCCTCGAGACCCTAGATGAAACGCTAGACGAGCTCCATAAAGCCGTCGTGGACCTCCACGACTATCCTAATAGCCCTAACAACAAGTCCATAACCCAACACGCAGAAGATCTCAAGACATTGCTAAGCTCTGCCATTACGAACCAAGAGACTTGTTTAGACGGGTTCTCGTATGATGAAGCTGATAAGAAGCTGCGTAAGAGGTTGATCAAAGGTCAGGTTCATGTTGAGAAGCTGTGTAGTAATGCATTGGCTATGGTTAAGAACATGACTGATACTGATATGGCTAATTATGAGACTGGTCATAATAAGATGAACAGGAGGCTGCTTAACCAGGAGGGGGAGGGGGAGGAGGAGAAGGGTGTCAAGTGGCCAGAGTGGTTGTCGGCGGCTGACCGTAGACTTCTGCAGTCAACGTCGGTGACGCCAAATGTAGTGGTGGCAGCGGATGGGAGCGGGAATTACCTTACGGTGGAGGCTGCAGTAGCGGCAGCGCCTACAGGGAGTAGCAGCCGATATGTGATTAGAATTAAGGCGGGAGTGTATAGAGAGAATGTGGAGGTGCCTAAGAATAAGATTAACATAATGTTTCTGGGGGATGGAAGAACTACTACTATCATTACAGGAAGCAGGAACGTGGTTGATGGCAGCACAACCTTCGATTCCGCAACTGTTGCTGTGGTGGGAGAGAGATTTCTAGCTCGAGACATAACGTTCCAGAACACAGCGGGGCCCTCCAAGCACCAAGCAGTAGCACTACGTGTCGGCTCAGACCTCTCCGCCTTCTACCGCTGCGACATGTTGGCATACCAAGACACCCTATACGTCCACTCCAACCGACAGTTTTACACGGGCTGCTATATCGCCGGCACAGTCGACTTCATCTTCGGCAACGCTGCCGCCGTTTTGCAGAACTGCGACATCCACGCGCGGAGACCCAATGCGGGCCAGAAGAACATGGTCACGGCCCAAGGTCGGACTGACCCAAACCAAAACACTGGGATTGTCATCCAGAAATGTAGAATCGGTGCCACGTCGGATTTGCTGCCGGTTCAGAGTAGCTTCCCGACATATCTAGGCAGACCGTGGAAAGAGTACTCCCGAACCGTGGTCATGCAAACGGCGATTAGTGATGTCATTAATCCGGCTGGGTGGTACGAGTGGTCTGGGACGTTTGCGCTCGACACGTTGTTTTACGGAGAGTATCAGAACACAGGGCCAGGCGCCAACACGTCGCAAAGAGTTACGTGGAAGGGGTTTAAGGTAATTACAAGTGCTTCCGAGGCTGAGGCTTATACTCCTGGTAGCTTCATTGCTGGTGGGAGCTGGTTGAGTTCTACTGGTTTTCCTTTCTCTCTTGGTCTCTGA 1734 50.92 MARLKEFIKNKKLFLASLSALLIVAVIIGIVVGVNSRDKNSDNSPGHSIVKNSCSSTLYPALCYSTISSNLDAATKPISTKKDLIELAINATTKVVQQNYYGIKKLTTLTNLTKREKSALHDCLETLDETLDELHKAVVDLHDYPNSPNNKSITQHAEDLKTLLSSAITNQETCLDGFSYDEADKKLRKRLIKGQVHVEKLCSNALAMVKNMTDTDMANYETGHNKMNRRLLNQEGEGEEEKGVKWPEWLSAADRRLLQSTSVTPNVVVAADGSGNYLTVEAAVAAAPTGSSSRYVIRIKAGVYRENVEVPKNKINIMFLGDGRTTTIITGSRNVVDGSTTFDSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYTGCYIAGTVDFIFGNAAAVLQNCDIHARRPNAGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLLPVQSSFPTYLGRPWKEYSRTVVMQTAISDVINPAGWYEWSGTFALDTLFYGEYQNTGPGANTSQRVTWKGFKVITSASEAEAYTPGSFIAGGSWLSSTGFPFSLGL 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 214851 217749 + Conep17aG0003300.1 Cone17ag0033 455510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0033 577 Pfam Plant invertase/pectin methylesterase inhibitor 49 208 IPR006501 GO:0004857(InterPro)
Cone17ag0033 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 213 IPR035513 -
Cone17ag0033 577 Pfam Pectinesterase 266 562 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone17ag0033 577 NCBIfam pectinesterase inhibitor domain 23 212 IPR006501 GO:0004857(InterPro)
Cone17ag0033 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 213 IPR035513 -
Cone17ag0033 577 ProSitePatterns Pectinesterase signature 1. 291 310 IPR018040 -
Cone17ag0033 577 FunFam Pectinesterase 260 577 - -
Cone17ag0033 577 PANTHER PECTINESTERASE 13 568 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone17ag0033 577 FunFam Pectinesterase 46 213 - -
Cone17ag0033 577 SUPERFAMILY Pectin lyase-like 263 576 IPR011050 -
Cone17ag0033 577 CDD PMEI-like_3 53 213 - -
Cone17ag0033 577 Gene3D - 260 577 IPR012334 -
Cone17ag0033 577 SMART PMEI_2 45 208 IPR006501 GO:0004857(InterPro)
Cone17ag0033 577 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0748 Cone-Chr14:4183617 Cone17ag0033 Cone-Chr17:214851 3.34E-133 dispersed
Cone17ag0033 Cone-Chr17:214851 Cone20ag0960 Cone-Chr20:6865051 2.94E-172 dispersed
Cone17ag0033 Cone-Chr17:214851 Cone17ag0034 Cone-Chr17:222144 6.99E-115 tandem
Cone17ag0033 Cone-Chr17:214851 Cone20ag1370 Cone-Chr20:8765996 0 wgd
Cone17ag0033 Cone-Chr17:214851 Cone4ag0890 Cone-Chr4:6423977 1.24E-121 wgd
Cone17ag0033 Cone-Chr17:214851 Cone7ag0832 Cone-Chr7:6238440 2.53E-294 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0033 K01051 - mdm:103403339 804.668