Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0034 ATGGATTTGATGAATTTCATCAAGAAGTCTTTTCAACGTAAGTGGATCAAAATTGCTGTCCCCGCCGTCATCCTTGTAGCGATTGTTGTCCTTGCTACCGTTGTAGGTGTAACACAGAGCAAAAACAACTCCTCCTCTCATAAGAATGAGTTGACTCCGGCCGCGTTTGTCAAGAGTGTATGTACCCTCACTCAATATCCATCCACATGCATCTCCTCCTTGGATAATTCCATCACCACCAACCCTATGGTTCTCTTCAACATCTCTCTCCACGTTGCCCATCAAGAACTCTCCGGTCTCTCAAACTACGTCACAGACCTCACTGTTAATTACGATAGTGACACTGCCGAAAGGCGTGGTCTGAAGGTCTGCCAGATTGTTCTCGACGACGCAGTGGACAAGGTCAACGACACGATATCGTTGATGGTACGACATAATAATGCCGGCTACTTGTCGTCTTCTGAGATCGACGACTTGAGGACATGGCTAAGCACCACACTTAGCGACCAAGATACCTGCTTGGACGCGCTTCTAGAATCCAATTCCACGCTACTAGGGGACCTACAAACTGCTATGAAAAAACCCACAGAGCTTGCTAGCAACAGCCTAGCCATTGTCACTATAGTTCTTAGTCTACTCACTAGTGACAGCTACAAGTCGAACAGCGGGAGGAGGTTACTAGGGCGGTTCGAAACGATGTCATTACAACGTGACACGGAGCAGCCTCATTGGATGAGGAGGATGGGTAATATTCGGAGACTATTAGAGGATAACAACGTAAAACCGGATGTGGTGGTGGCCAAGGACGGAAGCGGGAACTTCACGACGATTGGAGAGGCAGTGAAGACAGTTCCGGAGAAGAGTAACGAGAGATTTGTGATATATGTGAAGGAAGGTGTTTATAAGGAGAATGTGGTGATGGATAAGAAAAGGTGGAATGTAATGATTTATGGTGATGGGAAGGATAGGACCATTGTTTCCGACGGATTGAACAATGTCGACGGCACTAGAACCTACGACTCGGCTACTTTTGCTGTGGCAGGGCAAGGTTTTATTGCAAAAGACATGGGCTTTATTAATACAGCCGGCCCAAAGAAGGGTCAAGCAGTGGCATTCAGGTCTGATTCCGACAGATCGGTATTTTACAGATGCTCATTCGAAGGCTACCAAGACACCCTCTATGCTCATGCAAACCGACAGTTCTATAGAGATTGCGACATCATCGGAACTGTCGACTTCATTTTCGGTTATGCTGCCGTCGTGTTCCAGAATTGTAGAATCATGCCCAGACAACCCCTCAGTGGGCAATCCATCACCATCACAGCTCAAGGCAATACCGATCGGAATCATAGCGGAGCCACTTCAATCCAGAAATGTACAATTTTGCCTTTCGACAATGTCAGTGCGCCTACTTATTTGGGCAGGCCTTGGAAGTATCATGCTACTGTAGTCATCATGCAGACGGAGATTAGGTCGTTCGTGGACCCATTGGGCTGGTTGGAATGGGATCAAAATGTCGTGCCACCTAGAACAACATATTTCGGGGAGTATCAGAATACTGGGGCTGGATCGAACGTTAATGGCAGGGTGAAATGGCCTACGTATAAGCCCGCTTTAACTGATATGGAGGCCGAGAAATTTACTGTTGAATCTCTGATCCTCGGCCCGGAATGGTTGCCTGATACATATGTCCCGTTTACTGCTTCCTTAAAATAG 1716 47.09 MDLMNFIKKSFQRKWIKIAVPAVILVAIVVLATVVGVTQSKNNSSSHKNELTPAAFVKSVCTLTQYPSTCISSLDNSITTNPMVLFNISLHVAHQELSGLSNYVTDLTVNYDSDTAERRGLKVCQIVLDDAVDKVNDTISLMVRHNNAGYLSSSEIDDLRTWLSTTLSDQDTCLDALLESNSTLLGDLQTAMKKPTELASNSLAIVTIVLSLLTSDSYKSNSGRRLLGRFETMSLQRDTEQPHWMRRMGNIRRLLEDNNVKPDVVVAKDGSGNFTTIGEAVKTVPEKSNERFVIYVKEGVYKENVVMDKKRWNVMIYGDGKDRTIVSDGLNNVDGTRTYDSATFAVAGQGFIAKDMGFINTAGPKKGQAVAFRSDSDRSVFYRCSFEGYQDTLYAHANRQFYRDCDIIGTVDFIFGYAAVVFQNCRIMPRQPLSGQSITITAQGNTDRNHSGATSIQKCTILPFDNVSAPTYLGRPWKYHATVVIMQTEIRSFVDPLGWLEWDQNVVPPRTTYFGEYQNTGAGSNVNGRVKWPTYKPALTDMEAEKFTVESLILGPEWLPDTYVPFTASLK 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 222144 223949 + Conep17aG0003400.1 Cone17ag0034 455511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0034 571 CDD PMEI-like_3 59 207 - -
Cone17ag0034 571 FunFam Pectinesterase 53 209 - -
Cone17ag0034 571 PANTHER PECTINESTERASE 18 561 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone17ag0034 571 SUPERFAMILY Pectin lyase-like 261 568 IPR011050 -
Cone17ag0034 571 FunFam Pectinesterase 257 570 - -
Cone17ag0034 571 NCBIfam pectinesterase inhibitor domain 27 207 IPR006501 GO:0004857(InterPro)
Cone17ag0034 571 Pfam Plant invertase/pectin methylesterase inhibitor 56 205 IPR006501 GO:0004857(InterPro)
Cone17ag0034 571 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Cone17ag0034 571 ProSitePatterns Pectinesterase signature 1. 288 307 IPR018040 -
Cone17ag0034 571 Gene3D - 257 570 IPR012334 -
Cone17ag0034 571 Pfam Pectinesterase 263 555 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone17ag0034 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 209 IPR035513 -
Cone17ag0034 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 209 IPR035513 -
Cone17ag0034 571 SMART PMEI_2 52 205 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0034 Cone-Chr17:222144 Cone4ag0890 Cone-Chr4:6423977 2.37E-190 dispersed
Cone17ag0033 Cone-Chr17:214851 Cone17ag0034 Cone-Chr17:222144 6.99E-115 tandem
Cone20ag1369 Cone-Chr20:8764581 Cone17ag0034 Cone-Chr17:222144 1.37E-54 transposed
Cone17ag0034 Cone-Chr17:222144 Cone20ag1368 Cone-Chr20:8762971 2.23E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0034 - - - 0.0