Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0038 ATGATGTGGTGGAGATCAGCCTCTTTCATTCGCGACAAGCCGCTAAACGACGACGCTTCTGAAACCGAAACCCTCTCTTTTTCTCCACCTACAAACTACACCATGGCCGACACCTTCCAAAGCCCTAACCCGAAGATCTCCGCCTACTATCAGACCAGGGCGGCTCATACCGGTGTCGTCACCAGCGACTGGCTCGCCCAGGCTCAGGCAGCCGTCGGCAGCCAGTCCATTGACCTCACTGCACCCAAGACTGATGTTATAGCCTCCTCCTCTTCCACCAAACCGTTCAGTGTCATCGATGAGTTTAATAACTGGCGGAAACAGCCTGATTTGGCTGAAGCAGTGGCCGCGATTCGGGCTTTGGCTGTTGTCATTCGTTCCAGCGAGGCCACAACTATGATGGAGCTCGAAATTGAGCTGAAGAAGGCTTCAGACTCTCTAAAGTCGTGGGACACAACCTCAATCTCTTTAACAGCGGGCTGTGATTTGTTCATGCGGTATGTAACAAGAACAGCAGCTTTAGAATACGAGAACTTCAATTCAGCTAGGTGTCGCTTGATTGAACGAGCAGAAAAATTTGGGGAGATTTCTTGTAAGGCTCGTAGAATCATTGCAATGCTCAGTCAAGAATTCATCTTTGATGGTTGTACCATTTTAGTTCATGGTTTTTCTCGGGTTGTTATGGAAGTTCTGAAGATCGCTGCACAGAATAAGAAGCTCTTCAGAGTATTCTGCACAGAGGGAAGACCAGACAGAACGGGTCTAAGACTGTCGAACGAGCTGGCCAAGCTTGATGTTCCTGTCAAGCTCCTAATCGACTCTGCAGTAGCTTATGCCATGGACGAGGTCGATATGGTACTTGTTGGGGCAGATGCGGTGGTTGAAAGTGGAGGAATCATAAACATGATGGGCACATATCAGATTGCATTAGTGGCCCACAGCATGGACAAGCCAATGTATGTGGCTGCTGAGAGCTACAAGTTTGCTCGCCTGTATCCATTGGACCAGAAAGACATGGCCCCTGCCTTACGCCCCATTGATTTTGGAGTACCCATCCCATCCAAGGTGGAGGTGGAAAAGTCAGCTCGGGATTATACGCCTCCCCAGTATCTTACTCTTCTCTTTACGGATTTGGGTGTTCTCACCCCGTCTGTGGTGAGTGACGAGCTCATCCAACTATACTTGTAG 1188 49.33 MMWWRSASFIRDKPLNDDASETETLSFSPPTNYTMADTFQSPNPKISAYYQTRAAHTGVVTSDWLAQAQAAVGSQSIDLTAPKTDVIASSSSTKPFSVIDEFNNWRKQPDLAEAVAAIRALAVVIRSSEATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTAALEYENFNSARCRLIERAEKFGEISCKARRIIAMLSQEFIFDGCTILVHGFSRVVMEVLKIAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYAMDEVDMVLVGADAVVESGGIINMMGTYQIALVAHSMDKPMYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVEKSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 238632 241056 + Conep17aG0003800.1 Cone17ag0038 455515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0038 395 FunFam Translation initiation factor eIF-2B subunit alpha 94 196 - -
Cone17ag0038 395 Gene3D - 199 395 IPR042529 -
Cone17ag0038 395 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 93 395 IPR051501 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Cone17ag0038 395 Coils Coil 133 153 - -
Cone17ag0038 395 SUPERFAMILY NagB/RpiA/CoA transferase-like 111 394 IPR037171 -
Cone17ag0038 395 Pfam Initiation factor 2 subunit family 108 383 IPR000649 GO:0044237(InterPro)
Cone17ag0038 395 FunFam Translation initiation factor eIF-2B subunit alpha 199 395 - -
Cone17ag0038 395 Gene3D - 95 196 IPR042528 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0038 Cone-Chr17:238632 Cone1ag0825 Cone-Chr1:54088214 4.78E-21 dispersed
Cone17ag0038 Cone-Chr17:238632 Cone20ag1363 Cone-Chr20:8743825 1.29E-261 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0038 K03239 - csv:101211420 665.996