Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0049 ATGGTGACATTGTCATACCCGTCTAGGCCGGAGGTGATTGTATTGAAGGACTTCGGTCTAAAGATTGAAGGTGGGAGGAGAGTAGGTCTCGTGGGGCAAAGCGGATCAGGAAAATCAACGGTCGTTTGGTTGATACAAAGGTTTTATGATCCAAATAAAGGAAGGGTGCTTATGGGAGGAGTGGATTTGAGAGAGGTTAATGTAAAGTGGTTAAGAAGGCAGATATCTTTAGTTGGTCAAGAGCCTGCCGGAAGTATAAGAGAGAATATCGCATTTGGAAACCCAAACGCTTCTTGGGCGGAAATCGAAGAAGCTGCCAGAAATTCTTACATTCATAACTTCATTAGTGGTCTCCCTCAAGGCTTTGAAACTCAGGTGGGTGAAAGCGGGGCCCAGCTATCGGGCGGACAGAAGCAAAGGATTGCAATTGCAAGGGCAATACTGAAGAAATCAAGGGTGCTGCTGCTAGATGAAGCAAGTAGTGCATTGGACTTAGAATCTGAGAAATATGTTCAACAAGCACTTAAGAAGGTCTATAAGCAGGCCACTACGGTTGTGGTGGCCCACCGGATTTCTACCATCAGAGAGGCCGATATGATTGCTGTTGTGAGAGATGGCATGGTTGTATAA 630 45.71 MVTLSYPSRPEVIVLKDFGLKIEGGRRVGLVGQSGSGKSTVVWLIQRFYDPNKGRVLMGGVDLREVNVKWLRRQISLVGQEPAGSIRENIAFGNPNASWAEIEEAARNSYIHNFISGLPQGFETQVGESGAQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKYVQQALKKVYKQATTVVVAHRISTIREADMIAVVRDGMVV 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 289075 289894 + Conep17aG0004900.1 Cone17ag0049 455526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0049 209 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 4 209 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone17ag0049 209 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 2 209 IPR039421 GO:0015421(PANTHER)
Cone17ag0049 209 FunFam Multidrug resistance protein 1A 1 209 - -
Cone17ag0049 209 Pfam ABC transporter 15 160 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone17ag0049 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 209 IPR027417 -
Cone17ag0049 209 SMART AAA_5 24 206 IPR003593 GO:0016887(InterPro)
Cone17ag0049 209 Gene3D - 2 209 IPR027417 -
Cone17ag0049 209 ProSitePatterns ABC transporters family signature. 133 147 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0049 Cone-Chr17:289075 Cone20ag1355 Cone-Chr20:8695961 2.15E-119 dispersed
Cone17ag0047 Cone-Chr17:286802 Cone17ag0049 Cone-Chr17:289075 2.67E-40 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0049 K05658 - vvi:132254248 332.028