Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0083 ATGTCTGTAGAGGATTTGGAGGCAGCCCATAAAGATGGCCGGCCCCCAACCGAAGCCGAGTTGCAGCAATTTTTCCTGCCGTACCGAGGATTCTGTGCTCGTAAGGGGATTGAAGCCAAGGAAGTGATACTCCATGAAATAGATGTTCCAAATGCACTTGCCGATTACATTCTAAGAAACTCCATTAGCAACGTTGTCGTGGGTGCTTCGAATTGCAATGCTCTTATCAGGAAGTTTAAACAACCAGATGTACCAACCAGCGTACTCAAATCAGCACCAGAATTTTGTGCAGTATATGTTATATCTAAAGGAAAAGTACAAATCAAGAGACTGGCAAATGAGCAGAATGCATATGAGGTTCACCCTCCTAGAAGTAATGCAGCCACTCCTAAATACCCATCTAGTCCGGACCGTAATTTGTATTCGCTGAGAAGTACTGCAGACTCATACCCTTCTAGAAAAATACCACTTTCTGACCCTGCTCTTGACTTGCCATTCCCTGAAGACATAAGCAGGAAAGTAAATAAGATGAACCAGAACAATAAGTTTAAGTCCAGCACAACGTATGATTCGATGGTATTTTTGGGAGAGAGTTTTCCTTCGATTAGTTCCAGCCATAGTTCTTCATCAGGCCGTACCGATATTTCGGGCCCCTTTAGCTTTAGGTCCGCTGGAACCTCATCTGATGCATCAAACTTTACAACTGAAGAGACTAGCTCTAAGAACTCTATCTCCTCCGTATCTGCTACACCGTCCCCTTTGGAAGCAGAAATGAGGAAACTGAGGCTCGAATTGAAACAGATCCTGGAGATGTATGAATCAACTTCGAACGAAATTGGTGTAGCAAGACATCGGGCAAGTGATAAACTACGATCGCAAACGGGAGAAATGAAAAAGTTAGAGGAAGCGCGACATGCAGAAGAGGCTGCCCGGGCATTGGCCCAGGTGGAGAAGCAGAAGACAAAGGTGGCAAGAGATGCAGCACAAACGGCACAAAGGCTAGTGGAAATCGAGACCCACAAGAGAAAGAAGGCGGAAAAGAAAGCCGTGGAAGAGGCAGAAGAGAGGAATAAAAAAAGTGATTCTTCATTGACATGGTGTAACATCCAGTATAGAAGATACACTATTGATGAAATCGAAACTGCTACGGATTACTTTGAAGATTCTTACAAGATCGGTGAAGGTGGTTATGGGCCGGTTTATAGAGGCACTCTTGATCACAACACTGTCGCCATAAAAGTGTTGAGGCCCGATTTATCACAAGGCCAGAAACAATTCCAACAAGAGGTGGAGGTTTTAAGCTGCATAAGGCATCCAAACATGGTTCTACTCTTAGGTGCATGCCCAGAATACGGATGCCTTGTCTATGAGTACATGGAAAACGGAAGCTTAGAAGACCGGCTTTTCCAAATAGACAACACCCCTCCAATCCCATGGAGAACCCGTTTCAGAATAGCTGCAGAAATAGCAACCGCCCTTCTCTTCATTCACCAAACCAAGCCCGAGCCCATTGTTCATAGAGACCTCAAACCGGCAAACATTCTCTTGGACCAGAACTACGTGAGCAAAATCGCGGATGTGGGCCTGGCTCGAATAGTTCCCGAACATCTTGCTAACGCTACTGCTCAATACCACATGACGGCAGCTGCCGGAACGTTCTGTTATATCGACCCGGAGTATCAACAGACCGGAATGTTGAGTGTCAAATCGGATGTATACTCATTAGGTGTTACCTTATTGCAGATCATCACTTCCAAGAGAGCAATGGGGCTTTCTAGATTGGTTGAGGAGGGTATTGAGAATGGAACTATTGAGAAAGTGCTTGATCCGGCTGTTATGGATTGGCCCGTTGAAGAGGCCCTATCTTTTGCAAAACTAGCTTTGAGATGCTGTGAGCTTAGGAAAAGAGAAAGACCGGAACTTGAAACCGAGGTTCTTCCAGAGCTTATCCGGCTCAAGAATATCGGATTAGCCGATGACGGCTTTCCTGTGCGGGCGCTTGAAGTCCGTGGTCCGTACAATATCAGTCAAAAGGAGGAGCTTAGTGAAAGCAACAGCAGCAGCACCACCAGAGAGGATATGGAGTTTGAAGGGCAGTTTTGGAAGATCGAGCTTTCTACCACCTTCTTGGAAACAGCAAATGTATGA 2148 45.62 MSVEDLEAAHKDGRPPTEAELQQFFLPYRGFCARKGIEAKEVILHEIDVPNALADYILRNSISNVVVGASNCNALIRKFKQPDVPTSVLKSAPEFCAVYVISKGKVQIKRLANEQNAYEVHPPRSNAATPKYPSSPDRNLYSLRSTADSYPSRKIPLSDPALDLPFPEDISRKVNKMNQNNKFKSSTTYDSMVFLGESFPSISSSHSSSSGRTDISGPFSFRSAGTSSDASNFTTEETSSKNSISSVSATPSPLEAEMRKLRLELKQILEMYESTSNEIGVARHRASDKLRSQTGEMKKLEEARHAEEAARALAQVEKQKTKVARDAAQTAQRLVEIETHKRKKAEKKAVEEAEERNKKSDSSLTWCNIQYRRYTIDEIETATDYFEDSYKIGEGGYGPVYRGTLDHNTVAIKVLRPDLSQGQKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMENGSLEDRLFQIDNTPPIPWRTRFRIAAEIATALLFIHQTKPEPIVHRDLKPANILLDQNYVSKIADVGLARIVPEHLANATAQYHMTAAAGTFCYIDPEYQQTGMLSVKSDVYSLGVTLLQIITSKRAMGLSRLVEEGIENGTIEKVLDPAVMDWPVEEALSFAKLALRCCELRKRERPELETEVLPELIRLKNIGLADDGFPVRALEVRGPYNISQKEELSESNSSSTTREDMEFEGQFWKIELSTTFLETANV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 463705 466586 + Conep17aG0008300.1 Cone17ag0083 455560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0083 715 Coils Coil 258 278 - -
Cone17ag0083 715 ProSiteProfiles Protein kinase domain profile. 386 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0083 715 Coils Coil 283 326 - -
Cone17ag0083 715 CDD STK_N 1 104 - -
Cone17ag0083 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0083 715 SUPERFAMILY Protein kinase-like (PK-like) 358 641 IPR011009 -
Cone17ag0083 715 Gene3D Phosphorylase Kinase; domain 1 354 458 - -
Cone17ag0083 715 PANTHER OS02G0152300 PROTEIN 11 658 IPR051348 -
Cone17ag0083 715 CDD STKc_IRAK 392 652 - -
Cone17ag0083 715 MobiDBLite consensus disorder prediction 203 252 - -
Cone17ag0083 715 SMART serkin_6 386 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0083 715 Pfam Protein kinase domain 387 641 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0083 715 MobiDBLite consensus disorder prediction 119 139 - -
Cone17ag0083 715 Gene3D Transferase(Phosphotransferase) domain 1 459 657 - -
Cone17ag0083 715 Coils Coil 328 363 - -
Cone17ag0083 715 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 359 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0083 Cone-Chr17:463705 Cone17ag0935 Cone-Chr17:7322544 1.04E-189 dispersed
Cone17ag0083 Cone-Chr17:463705 Cone20ag1321 Cone-Chr20:8556448 0 wgd
Cone17ag0083 Cone-Chr17:463705 Cone20ag0278 Cone-Chr20:1246104 7.15E-195 wgd
Cone17ag0083 Cone-Chr17:463705 Cone4ag0052 Cone-Chr4:270922 2.29E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82240 PF13768 VWA_3 1.30E-15 CL0128 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0083 - - - 0.0