Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0089 ATGGCAGGTTTGGCTCCAGAAGGATCCCAGTTTGATTCACAGCAGTATGACGCTAAAATGAGTGAAATACTCTCATCTGAGGGACAGGAATTCTTCACCTCATACGATGAAGTACATGAAAATTTTGATGGTATGGGATTGCAAGAGAACCTTCTAAGGGGGATCTATGCTTATGGTTTTGAGAAACCATCTGCAATTCAACAAAGAGGGATTGTTCCTTTCTGCAAAGGTCTTGATGTGATCCAACAGGCTCAATCTGGAACTGGAAAAACAGCTACCTTCTGTTCTGGAATCTTGCAGCAACTTGATTACAACAATGTCCAGTGCCAGGCTCTAGTTCTAGCTCCCACCAGGGAACTGGCCCAGCAGATTGAGAAGGTTATGCGAGCTCTTGGAGATTATCTCGGTGTTAAGGTGCATGCTTGTGTTGGAGGGACTAGTGTCCGTGAAGATCAACGCATTCTCCAAGCTGGTGTTCATGTTGTTGTTGGAACTCCTGGCCGTGTGTTTGACATGTTGAGGAGACAATCACTTCGTGCTGATTATATTAAGATGTTTGTCTTAGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGATATTTTCCAGCTATTGCCATCTAAAGTTCAAGTTGGGGTGTTCTCCGCAACAATGCCCCCAGAAGCTCTTGAGATCACTCGAAAATTCATGAACAAGCCAGTCAGAATCTTAGTAAAGCGTGATGAGCTCACTTTAGAAGGAATCAAGCAATTCTATGTCAATGTCGAAAAGGAAGACTGGAAGCTTGAAACTCTATGTGATCTTTATGAGACTCTGGCCATAACCCAAAGCGTAATTTTTGTGAACACAAGGCGAAAGGTTGACTGGCTCACAGACAAGATGAGGAGCCGGGACCACACAGTATCTGCCACCCATGGTGACATGGACCAGAACACAAGGGACATAATCATGCGTGAGTTCCGTTCTGGCTCATCCCGTGTTCTCATAACGACTGATCTCTTAGCCCGTGGGATTGATGTCCAGCAAGTTTCCCTCGTGATAAACTATGATCTGCCTACTCAACCCGAGAACTACCTTCACCGCATTGGACGAAGTGGACGGTTTGGAAGAAAAGGTTTTGCCATCAATTTTGTGACTGTAGAGGATGCTAAGATGTTGACTGATATTCAGAAGTTCTATAACGTGGTCGTCGAGGAGCTGCCTAACAACGTTGCTGATCTTCTCTGA 1242 44.77 MAGLAPEGSQFDSQQYDAKMSEILSSEGQEFFTSYDEVHENFDGMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYNNVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRADYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGFAINFVTVEDAKMLTDIQKFYNVVVEELPNNVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 476974 479604 + Conep17aG0008900.1 Cone17ag0089 455566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0089 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Cone17ag0089 413 SMART helicmild6 293 374 IPR001650 -
Cone17ag0089 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Cone17ag0089 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Cone17ag0089 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Cone17ag0089 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Cone17ag0089 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Cone17ag0089 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone17ag0089 413 CDD SF2_C_DEAD 253 383 - -
Cone17ag0089 413 Gene3D - 30 248 IPR027417 -
Cone17ag0089 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cone17ag0089 413 SMART ultradead3 59 256 IPR014001 -
Cone17ag0089 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Cone17ag0089 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Cone17ag0089 413 CDD DEADc_EIF4A 45 242 - -
Cone17ag0089 413 Gene3D - 249 413 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0089 Cone-Chr17:476974 Cone18ag0777 Cone-Chr18:4413828 4.47E-177 dispersed
Cone17ag0089 Cone-Chr17:476974 Cone20ag1318 Cone-Chr20:8545884 2.55E-140 wgd
Cone17ag0089 Cone-Chr17:476974 Cone20ag0276 Cone-Chr20:1225314 3.63E-197 wgd
Cone17ag0089 Cone-Chr17:476974 Cone4ag0917 Cone-Chr4:7457400 3.61E-284 wgd
Cone17ag0089 Cone-Chr17:476974 Cone7ag1231 Cone-Chr7:9130316 4.40E-285 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0089 K03257 - csv:101221456 778.089