Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0096 ATGTCGAATTCAACTTCAGCATCAGCTGATGATCATCAACAAGCTGCAACAAGTGCTTCTAATTATGGAACCGACGATAATAACTTTCTTCCACAGTACAATTTTTCTACTTCTCTACCTCAAACAAGTTCTGACAATCTTCATCACCATCAACCTCCATTAAAGAAGAAGAGAAACCTTCCAGGAAACCCAGACCCAGAAGCAGAGGTGATAGCTTTATCACCTAAAACACTTCAAACAACGAACAGATTCATATGTGAGATCTGCAACAAGGGTTTTCCAAGAGACCAGAATCTACAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAATTGAAGCAGAGAGCAAGCAAAGAGGTGAGGAAGAAGGTTTACGTTTGTCCAGAAGTAGGCTGTGTTCATCACGATCCTTCTAGAGCGTTAGGGGACTTGACTGGGATTAAGAAACACTTTTTCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTACGCGGTTCAATCTGATTGGAAAGCACATTCTAAAACATGTGGCACTAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCTAGGAGGGATAGTTTCATAACTCATAGAGCATTCTGCGATGCATTGGCAGAGGAGAGTGCGAGAGCCACAACAAGCACTACTACCTCCTGCATGATCACTTCTTCTTCTTCAAACCCATTACTTCTCTCCACCTCTTCTTCATCACTAAATCTGCCTCATCATCAGTTTCTTAGTCCCAGCCATGATCATCAGCATCAGCATCATCATCAAAACCCATTTCCCATGAAGAAAGAACAGCAACAACAAGATCATAGCAATCAGCTCATACCACCATGGCTAGTCGATCACAGTCTTCTTCCCTCATCAACCTATTCGATTTTCTCCACCTCCACCACCGCCGCTGCCACTGCTACTACCAGTAGCAAAGGATTAATACATCAAAAACAAAACCCTAACCCTAATCACATGGGTCCCACAATCATTGATAATAACTACCAAATACAGCAGCAGGCTGCAGCCATGTCTCTGATGAATAATCATAGCAATATGAATATGATGATCTCCCCACACATATCAGCCACTGCCTTGTTGCAGAAAGCAGCTCAAATGGGTGCAACACTTAGTGCCACGTCAGCCTCCTCTCAAGCCCCCATCTTGACCAGCAGCAGCAGCACCACTACTACTACGAACATCTCCTCATCACGCGATCATCATCAGTCATCTTCTTCAGCTCACGTTCCAGCGTCAAACTCCGCTAGAACTGCTTCTGGACTTCTTAGTTACAATGAGATGATGATGATGAATTCTGGGTTGATGATGGGTCCTACTAGCTCTCATCACGAACCTTCTTCTTTCGAGCAAGCTTTGCATAGTAGTATTACTGTTGGCGGGAATTATGAAGGTATGACGAGAGATTTTTTGGGGCTTAGACCTCTCTCTCACACTGATATTCTCACCATTAATGCTGCTTTTGGTAACTGCCTTAATACTGGTAACAATAATGACAGTGGTACTAGTATGAATTCACAGATCAGTAGTACCACTCATCATCAGGTTAATGATGATCATGATCATGATCCAACCCATAAATCAGCATGGCAAGACAGTAAATTTTGA 1644 43.07 MSNSTSASADDHQQAATSASNYGTDDNNFLPQYNFSTSLPQTSSDNLHHHQPPLKKKRNLPGNPDPEAEVIALSPKTLQTTNRFICEICNKGFPRDQNLQLHRRGHNLPWKLKQRASKEVRKKVYVCPEVGCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARATTSTTTSCMITSSSSNPLLLSTSSSSLNLPHHQFLSPSHDHQHQHHHQNPFPMKKEQQQQDHSNQLIPPWLVDHSLLPSSTYSIFSTSTTAAATATTSSKGLIHQKQNPNPNHMGPTIIDNNYQIQQQAAAMSLMNNHSNMNMMISPHISATALLQKAAQMGATLSATSASSQAPILTSSSSTTTTTNISSSRDHHQSSSSAHVPASNSARTASGLLSYNEMMMMNSGLMMGPTSSHHEPSSFEQALHSSITVGGNYEGMTRDFLGLRPLSHTDILTINAAFGNCLNTGNNNDSGTSMNSQISSTTHHQVNDDHDHDPTHKSAWQDSKF 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 514643 518128 + Conep17aG0009600.1 Cone17ag0096 455573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0096 547 MobiDBLite consensus disorder prediction 1 68 - -
Cone17ag0096 547 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 121 155 - -
Cone17ag0096 547 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Cone17ag0096 547 MobiDBLite consensus disorder prediction 526 547 - -
Cone17ag0096 547 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
Cone17ag0096 547 Gene3D Classic Zinc Finger 63 129 - -
Cone17ag0096 547 MobiDBLite consensus disorder prediction 1 48 - -
Cone17ag0096 547 MobiDBLite consensus disorder prediction 511 525 - -
Cone17ag0096 547 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 186 224 - -
Cone17ag0096 547 Gene3D Classic Zinc Finger 138 218 - -
Cone17ag0096 547 SMART c2h2final6 125 155 IPR013087 -
Cone17ag0096 547 SMART c2h2final6 84 106 IPR013087 -
Cone17ag0096 547 SMART c2h2final6 160 180 IPR013087 -
Cone17ag0096 547 MobiDBLite consensus disorder prediction 386 428 - -
Cone17ag0096 547 MobiDBLite consensus disorder prediction 511 547 - -
Cone17ag0096 547 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 501 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone17ag0096 547 MobiDBLite consensus disorder prediction 248 281 - -
Cone17ag0096 547 FunFam protein indeterminate-domain 12-like 63 131 - -
Cone17ag0096 547 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 159 183 - -
Cone17ag0096 547 MobiDBLite consensus disorder prediction 254 270 - -
Cone17ag0096 547 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Cone17ag0096 547 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Cone17ag0096 547 SUPERFAMILY beta-beta-alpha zinc fingers 83 180 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0096 Cone-Chr17:514643 Cone3ag0282 Cone-Chr3:1468105 3.01E-102 dispersed
Cone17ag0096 Cone-Chr17:514643 Cone4ag0926 Cone-Chr4:7625461 7.29E-110 wgd
Cone17ag0096 Cone-Chr17:514643 Cone7ag1220 Cone-Chr7:9051517 7.41E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45003 PF00190 Cupin_1 1.60E-29 CL0029 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0096 K25870 - gmx:100819692 397.127