Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag0097 | ATGTCCAAAACTCCAATCAATCAAAACCCTAGCAGCAATAATAGTATTAATACTACTATCAGACACGTCGGAAACGGATCTTCTTCTTCTTCCCCTTCAACGACGAGCCAAGCATGCGCCGCCTGTAAATACCAACGCAGGAAGTGCGCTCCGGACTGCATTCTCGCTCCTTACTTCCCTCACCATCGCCAACGCCAGTTTCAAAACGCGCACAAGCTGTTCGGCGTCAGCAACATTACGAAGATTTTGAAAACCCTAGACCCTTTTCAGAAGGAAGAAGCCATGAGGACTATCATCTTTCAATCCGACGTTAGAGCGACGGATCCCGTCGGCGGTTGTTATAGAATTATACGTGATCTTCAACGTCAGATTGATTACAGCAACGCCGAGCTCGACATTGTTCTTCACCAGCTTGCCATTTGCAAATCCCAGGCCCAACAGCAGGAACAGAATGATCATCTTCATCCCCATGATCATGAGGAGGAGGATCATTCGCATGTTCTATCGCAGCAGTATCATCAGTATTTGCAGCAGCAGCAACAGCATCCATTTCAACCGGAACCGTACGTTCAGATTGACCAGAATCATGATCATGATCAGATCGTCCATCATGACTTGCAGGAAGATTTAAGCAGTTTTTGGCGCATGCAGCAATCGTTGCAGTCTTCTTCTTCGATTTCGTCTACTACGTTGCATGCCAAGGAAAGTTTGTTACCTGCGGCCTGTTCTAGTATTGAAGGATATGAGCTTGATCATCCTCCTCCACCTCCTCCCCCTCCTCATCATGATCAGCAGAAAGAGTTAGCTCTTCATGAAAGAAGGTCTGTTTACGTACCCTAA | 840 | 46.67 | MSKTPINQNPSSNNSINTTIRHVGNGSSSSSPSTTSQACAACKYQRRKCAPDCILAPYFPHHRQRQFQNAHKLFGVSNITKILKTLDPFQKEEAMRTIIFQSDVRATDPVGGCYRIIRDLQRQIDYSNAELDIVLHQLAICKSQAQQQEQNDHLHPHDHEEEDHSHVLSQQYHQYLQQQQQHPFQPEPYVQIDQNHDHDQIVHHDLQEDLSSFWRMQQSLQSSSSISSTTLHAKESLLPAACSSIEGYELDHPPPPPPPPHHDQQKELALHERRSVYVP | 279 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 522859 | 523698 | + | Conep17aG0009700.1 | Cone17ag0097 | 455574 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag0097 | 279 | MobiDBLite | consensus disorder prediction | 264 | 279 | - | - | |
| Cone17ag0097 | 279 | Pfam | Lateral organ boundaries (LOB) domain | 38 | 133 | IPR004883 | - | |
| Cone17ag0097 | 279 | MobiDBLite | consensus disorder prediction | 146 | 167 | - | - | |
| Cone17ag0097 | 279 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 36 | 180 | - | - | |
| Cone17ag0097 | 279 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Cone17ag0097 | 279 | MobiDBLite | consensus disorder prediction | 246 | 279 | - | - | |
| Cone17ag0097 | 279 | ProSiteProfiles | LOB domain profile. | 37 | 138 | IPR004883 | - | |
| Cone17ag0097 | 279 | MobiDBLite | consensus disorder prediction | 151 | 167 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag0095 | Cone-Chr13:583641 | Cone17ag0097 | Cone-Chr17:522859 | 4.44E-31 | dispersed | |
| Cone17ag0097 | Cone-Chr17:522859 | Cone2ag0868 | Cone-Chr2:34633696 | 6.92E-34 | dispersed | |
| Cone17ag0097 | Cone-Chr17:522859 | Cone20ag1310 | Cone-Chr20:8508985 | 2.40E-121 | wgd | |
| Cone17ag0097 | Cone-Chr17:522859 | Cone4ag0070 | Cone-Chr4:352109 | 5.31E-22 | wgd | |
| Cone17ag0097 | Cone-Chr17:522859 | Cone7ag0064 | Cone-Chr7:276888 | 1.38E-21 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45004 | PF00190 | Cupin_1 | 1.20E-32 | CL0029 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag0097 | - | - | - | 0.0 |