Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0100 ATGAGGATGCTGCTGCTGCTGCTGCTACTGATGATGATCAAGCTAGGATTCCCTTTCCTTTTCTTATCAATCTGTGAAGCTAAAGAGACCATTGCATTGTCCCCAAGAAGGCCGCCACAAAAATTTCCAGAAACTCGCCAAATTAGCCCAATCGAATCGTCCTCTCTTCCACCAGAACATGCTGTCTCTCCAACAACTCAAAGGTTTAGCAGAAAACGGCACGAAAAGTTTGTTACTCACCCTCTGGGTAAATCACCGGCTCAGATGAACATGTCTTCTCCAGGTAAGAAATGGCCGGAAAAGAATCTGAATGGTCCTACATCCTCACCACCAATATATTCGCACCATCATCGCCATGGAAAAGGAAAATTTGGAAGCTCTGCTTCAAGCCCAAGTTCTCCAATATTTCCACCGTCTTATACTCGCCAAGGCCCTTCAATCTCCCCCTCTGCAGCTAGCCCGAGTTCTCTTGCACCGGCACCGGTACCAACAAGTCTATCAAACTACTTCAATATACCGATTCCTTCCCCAAAAATTTCACCTTTGGCTTCTTCGGTAAAGAAGAAAAAGAACCTGCCATCATCACCAGTCCTAACCTTACCACCTCCACCTCCAAATGAAGAATGTAATTCAATAACATGCTCCGAGCCATTGACATATACACCTCCCGGCTCACAATGTGGTTGTGTTTGGCCGGTTCAAGTCGGAATCCGCCTTGTGATCACAATATACAAGTTTTTCCCTTTAGTGTCGGAATTGGCTAGTGAAATTGCAGATAGCATACGTATAAACCATAGCCAAGTCCGCATTATTGGAGCCGATGCGGCTACTCAAGAGCTTGGGGAAACCACAGTTCTTATCAACTTAGTACCTGAAGGAGTCAAATTCAATGATACCACTTCCTTTTTGATATATAAAAAATTCTGGCAAAGAAAGGTTTCCATTAAGTCTTCCCTATTTGGTGCCTATGAAGTACTATATGTTCGATATCCAGGCCTTCCTCCTTCTCCACCTCCAGGCTCTTCGAGCATTACTGACCTAGATGACGGGCCGAAGCCCAGTAATGTAATTGGTGGAAGTGCAGTTAAGCCTTTCCCAGTAGATGTCCCACGGGGAAGAAAACAAGGATTAGGTTCAAGCCTGATTGTTGTAATAATCTTATCTTCTTTCAGTGCCTGTGTTATATGTATTGGAGTTATTTGGTTTTTACTGTTAAAATGCAAAGCATGCGCCTTTCAACCCGAAGAAGCTCCCCACACATTAATAGCGTCCACGGAAAAACAAACAGGAACTATTGGGTCTATAATGTTTGGAAGTGGTCCCGGTTCGGGGTCGATTTCATTCAATTCCGGTGCTCTAACATACACAGGATCGGCCAAGAACTTCACTCTGAAAGATATAGAAAGAGCCACTAATAACTTTTCTGCTTCAAGAATACTTGGAGAAGGTGGCTTTGGGCTTGTTTATAAGAGCATTTTTGATGATGGAAGAGAAGCTGCTGTTAAGGTACTTAAGAGAGACAACCATCATGGAAGTAGAGAATTCTTAGCCGAAATCGAAATGCTTAGCCGTCTACACCATCGAAATTTAGTTAAATTGCTCGGTATTTGTACGGAAGACCATGTCCATTGCCTTGTCTATGAACTCATCCCAAATGGAAGCGTTGAATCCCATTTACACGGCATTGACAAAGAAACCGATCCACTTGATTGGGATGCTCGCATGAAAATCGCCCTTGGAGCGGCTCGGGGTTTAGCATATTTGCATGAAGATTCTAACCCTCGAGTCATTCACCGTGATTTCAAGTCGAGTAACATCTTATTGGATTATGACTTCACACCTAAAGTTTCGGATTTCGGTCTAGCTCGAACGGCATTAGAAGAAGGCAACAAACACATTTCCACTCATGTTATGGGAACTTTTGGATATTTGGCTCCTGAGTATGCTATGACGGGTCATCTTCTAGTAAAGAGTGATGTTTACAGTTACGGAGTCGTTCTTCTAGAGCTACTTACCGGGAAAAAACCGGTAGACTTGTCACTGCCATCTGGTCAAGAAAATCTCGTAACGTGGGCCCGCCCGTTTCTCACGAGTAAAGAAGGATTGGAAACCATAATCGACCCAAAAATTAAACCACAAGTCTCATTTGACAACCTTGCCAAAGTGGCGGCAATTGCTTCAATGTGTGTCCAACCCGAAGTGTCGCATCGCCCATTCATGGGGGAAGTCGTTCAAGCATTGAAGTTGGTTTGTAATGAATTTGATGAAACAAAAGGTTTCATGGGGTCAAGAGGAAGAACGAGTTGTAGCCAGGAGGAGGAAATAGTGGATATGAGTAATAATGGTAGTAACAAGATTGTGGGTGTTTCCAAGTCGTGCAGGTCGTTGCCGGAATGTGGAGTGGACCATGGGGGGAAAAGTGATGCCTTGTTGTCAACAGCTGATTGGTTGAATGCTTCTGTTGGGTTTGGGAAAGAGGAGGATGATCAGCCGTTTAGGAGATATTCTACTTCTGGCCCATTGAGGAGTGGAAGAAAAAGACAGTTTTGGCAGAGGTTGAGGAGTTTGTCTAGAGGAAGTATGAGTGAGCATGGTTCCTCTTCAAAGTTTTGGTCAGGCCACCATTAG 2628 44.1 MRMLLLLLLLMMIKLGFPFLFLSICEAKETIALSPRRPPQKFPETRQISPIESSSLPPEHAVSPTTQRFSRKRHEKFVTHPLGKSPAQMNMSSPGKKWPEKNLNGPTSSPPIYSHHHRHGKGKFGSSASSPSSPIFPPSYTRQGPSISPSAASPSSLAPAPVPTSLSNYFNIPIPSPKISPLASSVKKKKNLPSSPVLTLPPPPPNEECNSITCSEPLTYTPPGSQCGCVWPVQVGIRLVITIYKFFPLVSELASEIADSIRINHSQVRIIGADAATQELGETTVLINLVPEGVKFNDTTSFLIYKKFWQRKVSIKSSLFGAYEVLYVRYPGLPPSPPPGSSSITDLDDGPKPSNVIGGSAVKPFPVDVPRGRKQGLGSSLIVVIILSSFSACVICIGVIWFLLLKCKACAFQPEEAPHTLIASTEKQTGTIGSIMFGSGPGSGSISFNSGALTYTGSAKNFTLKDIERATNNFSASRILGEGGFGLVYKSIFDDGREAAVKVLKRDNHHGSREFLAEIEMLSRLHHRNLVKLLGICTEDHVHCLVYELIPNGSVESHLHGIDKETDPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKSSNILLDYDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGKKPVDLSLPSGQENLVTWARPFLTSKEGLETIIDPKIKPQVSFDNLAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFDETKGFMGSRGRTSCSQEEEIVDMSNNGSNKIVGVSKSCRSLPECGVDHGGKSDALLSTADWLNASVGFGKEEDDQPFRRYSTSGPLRSGRKRQFWQRLRSLSRGSMSEHGSSSKFWSGHH 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 531345 535791 + Conep17aG0010000.1 Cone17ag0100 455577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0100 875 ProSiteProfiles Protein kinase domain profile. 474 750 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0100 875 SUPERFAMILY Protein kinase-like (PK-like) 454 747 IPR011009 -
Cone17ag0100 875 CDD STKc_IRAK 480 748 - -
Cone17ag0100 875 Gene3D Transferase(Phosphotransferase) domain 1 550 763 - -
Cone17ag0100 875 FunFam Receptor-like serine/threonine-protein kinase ALE2 550 767 - -
Cone17ag0100 875 Gene3D Phosphorylase Kinase; domain 1 448 549 - -
Cone17ag0100 875 ProSitePatterns Protein kinases ATP-binding region signature. 480 502 IPR017441 GO:0005524(InterPro)
Cone17ag0100 875 MobiDBLite consensus disorder prediction 35 158 - -
Cone17ag0100 875 MobiDBLite consensus disorder prediction 46 65 - -
Cone17ag0100 875 MobiDBLite consensus disorder prediction 85 111 - -
Cone17ag0100 875 MobiDBLite consensus disorder prediction 125 158 - -
Cone17ag0100 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0100 875 Pfam Protein tyrosine and serine/threonine kinase 477 747 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0100 875 FunFam receptor-like serine/threonine-protein kinase ALE2 447 549 - -
Cone17ag0100 875 PANTHER OS01G0750732 PROTEIN 206 781 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0700 Cone-Chr11:4775332 Cone17ag0100 Cone-Chr17:531345 6.84E-117 dispersed
Cone17ag0100 Cone-Chr17:531345 Cone18ag0817 Cone-Chr18:5195317 4.70E-198 dispersed
Cone17ag0100 Cone-Chr17:531345 Cone20ag1308 Cone-Chr20:8501028 0 wgd
Cone17ag0100 Cone-Chr17:531345 Cone7ag1127 Cone-Chr7:8486782 1.97E-256 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82242 PF03847 TFIID_20kDa 4.30E-29 CL0012 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0100 - - - 0.0