Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0111 ATGAGTCGACACCAGAAGCGGGGGAAGCAGGAGAGAGGCTTTGATGTTACAGAGAAGGTAGTTGTTGCTGTTAAGGCGTCTAAGGAAATTCCCAAAAATGCATTAGTTTGGGCGTTGACCCGTGTTGTTCAACCTGGAGAGTGCATATCTTTGCTCGTAGTTGTCCCTTCACAAAGTTCTGGTAGAAGGTTATGGGGTTTTCCGAGATTTGCAGGGGATTGTGCCAGTGGTCACCGAAAAGCTCATGCTGGCAGCAGCTCAGAGCTGAAAGGCGATATTACAGATACTTGCTCCCAAATGATCCTTCAGCTACATGATGTTTATGATCCGAATAAGATAAATGTAAAGATAAAAGTTGTTTCTGGATCACCTACTGGGTCAGTGGCTGCAGAGGCAAAAAGAGTTCAAGCTAGCTGGGTTATTTTAGACAAACAGCTCAAGCATGAGGAGAAACGTTGCATGGAGGAGCTGCAGTGCAATATCGTGGTCATGAAGCATTCCCAGCCAAAAGTTCTCCGCTTAAATTTGGTTGGGTCTTCTCCGGAGGAGCCTGAGCTAGCCTGTTCATTACCTTCTGATCTTGAAGGAGAGTCTGAAGACCACCCCCATGAGAAGAAAGATAGTTCAGTACGTGGGCCAGTGGTGACTCCAAGTAGTAGTCCAGAGCTAGGCACGCCGTTTACTGTGACTGAAGCTGGAACGTCTTCCATATCAAGCTCAGATCTTGGAACTTCACCATTTTTTATTCCTGTAATAAATGGAGATCGAAAGAAAGATGAAGCGTTAGTCATCAAAGAAGATCAGGATCTAGATGACAGTAGTTCAGAGTCGGATGATGAAAATTCATGTATTTCTTCAGAGAGTCTACGATTCAAACCATGGCTTAATGAATTTTTAAGCCCTCATCACCATTCATCACAATACATAAAGGGAAAGTCTCAGAGATATGATGTTACGCCTCAAGCTTTGACAACTAACTCACTATTACAGAAATACTCAAAACTTGATAGAGAAGCTGGAGCTAGTTTACCAAACCGTAGAACGGTCATGGAGTTTGGCACAAATGTGAGAGAAGCAGTTTCATTGTCCAGAAGCAATCCTCCTGGCCCACCTCCACTGTGTTCAATATGCCAACACAAGGCACCTGTCTTTGGTAAACCTCCAAGGTGGTTTAGCTTTGCCGAGCTAGAGCTTGCTACAGGCGGGTTTTCACAAGCCAATTTCTTAGCGGAAGGAGGATTCGGATCTGTTCATAGAGGGGTATTACCTGATGGTCAGGTTGTTGCAGTCAAGCAACACAAATTAGCAAGTTCTCAAGGAGACCATGAATTTTGTTCAGAAGTTGAAGTCCTCAGTTGTGCTCAGCATAGAAATGTTGTCATGTTGATTGGGTTCTGTATCGAGGACAAAAGAAGGTTACTTGTTTATGAATATATCTGCAACGGATCACTAGATTTTCATCTATATGGCCGGCAAAGAGAACATCTAGAGTGGTCTGCAAGGCAGAAAATCGCTGTGGGAGCTGCTCGAGGACTGAGATATCTTCACGAAGAATGTAGAGTGGGTTGTATTGTTCACCGTGACATGCGGCCAAACAACATTCTCATCACTCATGATTTTGATCCAATGGTTGGGGATTTTGGTCTGGCAAGGTGGCAGCCTGATGGCGACGAGGGCGTGGAAACTAGGGTTATTGGGACATTTGGGTATTTAGCTCCAGAATATGCTCAAAGTGGGCAGATCACAGAAAAAGCTGACGTTTATTCATTTGGGGTGGTACTAGTCGAGCTCATCACCGGACGAAAGGCAGTCGACCTTAATCGGCCCAAAGGCCAGCAGTGTCTCACTGAGTGGGCACGGCCTTTGTTAAAAGAGTTTGCCATTGATGAATTGATAGACCCGAGGCTGGGGAATAACTACTCAGAGCATGAAGTTTACTGTATGCTTCAAGCTGCGTCCCTGTGTGTACGGCGGGACCCGGACACTCGGCCCCGAATGTCTCAGGTACTTCGTGTGCTGGAGGGTGACATGGTGATGGACTCCAATTACATGTCAACTCCAGGTTCTGATGTGGGTAGCCAGAGCGGTCGGATGTGGAGCGGGCCCCTCTTGGATGATGTGGTAGATAGGTTCAGTGGGAAGATCTCTGTTGGAAATTCAAGAAGTTAA 2169 45.87 MSRHQKRGKQERGFDVTEKVVVAVKASKEIPKNALVWALTRVVQPGECISLLVVVPSQSSGRRLWGFPRFAGDCASGHRKAHAGSSSELKGDITDTCSQMILQLHDVYDPNKINVKIKVVSGSPTGSVAAEAKRVQASWVILDKQLKHEEKRCMEELQCNIVVMKHSQPKVLRLNLVGSSPEEPELACSLPSDLEGESEDHPHEKKDSSVRGPVVTPSSSPELGTPFTVTEAGTSSISSSDLGTSPFFIPVINGDRKKDEALVIKEDQDLDDSSSESDDENSCISSESLRFKPWLNEFLSPHHHSSQYIKGKSQRYDVTPQALTTNSLLQKYSKLDREAGASLPNRRTVMEFGTNVREAVSLSRSNPPGPPPLCSICQHKAPVFGKPPRWFSFAELELATGGFSQANFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDHEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDFHLYGRQREHLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFDPMVGDFGLARWQPDGDEGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLNRPKGQQCLTEWARPLLKEFAIDELIDPRLGNNYSEHEVYCMLQAASLCVRRDPDTRPRMSQVLRVLEGDMVMDSNYMSTPGSDVGSQSGRMWSGPLLDDVVDRFSGKISVGNSRS 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 581592 585202 - Conep17aG0011100.1 Cone17ag0111 455588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0111 722 CDD STKc_IRAK 409 675 - -
Cone17ag0111 722 SUPERFAMILY Protein kinase-like (PK-like) 387 680 IPR011009 -
Cone17ag0111 722 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 682 - -
Cone17ag0111 722 MobiDBLite consensus disorder prediction 194 210 - -
Cone17ag0111 722 Gene3D Transferase(Phosphotransferase) domain 1 479 685 - -
Cone17ag0111 722 MobiDBLite consensus disorder prediction 181 240 - -
Cone17ag0111 722 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0111 722 Pfam Protein kinase domain 407 670 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0111 722 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Cone17ag0111 722 MobiDBLite consensus disorder prediction 212 240 - -
Cone17ag0111 722 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 478 - -
Cone17ag0111 722 PANTHER OS01G0750732 PROTEIN 282 686 IPR050885 -
Cone17ag0111 722 FunFam Dual-specific kinase DSK1-like 11 165 - -
Cone17ag0111 722 ProSiteProfiles Protein kinase domain profile. 403 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0111 Cone-Chr17:581592 Cone4ag0787 Cone-Chr4:4700713 5.12E-267 dispersed
Cone16ag0743 Cone-Chr16:8484471 Cone17ag0111 Cone-Chr17:581592 3.72E-93 wgd
Cone17ag0111 Cone-Chr17:581592 Cone2ag0294 Cone-Chr2:1523880 1.59E-95 wgd
Cone17ag0111 Cone-Chr17:581592 Cone20ag1297 Cone-Chr20:8447839 0 wgd
Cone17ag0111 Cone-Chr17:581592 Cone4ag0931 Cone-Chr4:7749425 0 wgd
Cone17ag0111 Cone-Chr17:581592 Cone4ag0731 Cone-Chr4:4028971 3.57E-94 wgd
Cone17ag0111 Cone-Chr17:581592 Cone7ag1209 Cone-Chr7:8992308 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82243 PF01233 NMT 5.80E-43 CL0257 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0111 - - - 0.0