Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0142 ATGGAGCAAAATCTAGTTATTACAAAGACACTGCTAAGCATAGTCCGCGTAGTTTATTTCATGCTGAGAAAGGGCATATCGAAGAGCAAGCTAGCGCTACTAGACCTCAACGTAATGATGAAACGCGGCAAACTCGCCGGTAAAGCCATCGGCCACCTCATAATGTTCCATCACCATCACGGCGGATCCGCCTCTAATGCTGGCCGCGCCGCTTCCCGCTCTCACAAACTTCAGCCCTCCTTCGTGGGAGCCACTGAGTACGAGTTCAGCTGCAGCAACAGCCCCGCCTTCCCTGCCTTCCACATAGGCAAGCGCCGACACCTGTTCGGACGCTGTGCCTACCCACCTTACACTCTGGAAGATGACGTGGCAGCTGCTAATACGGTCAAGACCGTTTTGGAGTTGTTGAACAAAGAGGTTGCTGCCGTTGAGGCATCACCGTTAATTGTACTTCCTGGGTTCGGAAGGAGTCCCATGGTCCGGCAGCTGAGGATAACCGACTCACCGTTCCCGTTACGGGAAGCCGATGAGGAATGCCACGTGGACAAAGCTGCTGAGGAGTTCATTAACAGATTTTACAAGGAGTTGAAGCTCCAGAAGTAG 603 52.74 MEQNLVITKTLLSIVRVVYFMLRKGISKSKLALLDLNVMMKRGKLAGKAIGHLIMFHHHHGGSASNAGRAASRSHKLQPSFVGATEYEFSCSNSPAFPAFHIGKRRHLFGRCAYPPYTLEDDVAAANTVKTVLELLNKEVAAVEASPLIVLPGFGRSPMVRQLRITDSPFPLREADEECHVDKAAEEFINRFYKELKLQK 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 729920 730774 - Conep17aG0014300.1 Cone17ag0142 455619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0142 200 Pfam Cotton fibre expressed protein 180 200 IPR008480 -
Cone17ag0142 200 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0142 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0142 Cone-Chr17:729920 Cone4ag0954 Cone-Chr4:8158828 1.07E-43 dispersed
Cone16ag0714 Cone-Chr16:8327478 Cone17ag0142 Cone-Chr17:729920 5.72E-53 wgd
Cone16ag0714 Cone-Chr16:8327478 Cone17ag0142 Cone-Chr17:729920 5.72E-53 wgd
Cone17ag0142 Cone-Chr17:729920 Cone2ag0316 Cone-Chr2:1659786 2.96E-57 wgd
Cone17ag0142 Cone-Chr17:729920 Cone20ag1268 Cone-Chr20:8291047 1.08E-114 wgd
Cone17ag0142 Cone-Chr17:729920 Cone4ag0769 Cone-Chr4:4420990 4.63E-43 wgd
Cone17ag0142 Cone-Chr17:729920 Cone7ag1177 Cone-Chr7:8777551 3.88E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g4 Blo01g01484 . . . . . . Bma01g02238 . . Cma01g01777 Cma05g00116 . Car12g00229 . Cpe07g00209 . . . . . . . . . . . . . . . Cone20ag1268 Cone17ag0142 Cone16ag0715 Cone2ag0316 . . . . . . . . . . Bma01g00959 . . . . . Cma12g00246 Car01g01370 Car05g00100 Cpe11g00096 Cpe02g00508 . . . . . . . . . . . . . . . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001624 2 1 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 6 3 2 1 2 2 2 2 2 2 4 2 1 70