Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0143 ATGGCGATGTCCTGCAAGGATGGATTCAAAGGAGTGATGGATAATGGAAAATACGTGAGGTATACACCTGAGCAGGTTGAAGCACTAGAAAGGCTCTATCATGAATGCCCTAAACCCAGTTCTATTCGTCGCCAGCAGCTTATCAGAGAGTGTCCCATTCTCTCCAACATCGAGCCTAAGCAGATTAAAGTCTGGTTTCAGAACAGAAGATGCAGAGAGAAGCAGAGGAAGGAAGCGTCAAGGCTGCAAGCTGTGAATAGAAAGTTGACGGCCATGAATAAGCTGTTAATGGAGGAGAACGATCGGTTGCAGAAGCAGGTGTCTCATTTGGTTTATGAGAATGGCTACTTCCGTCAGCATACTCAGAATACGACGCTTGCAACGAAAGATGCAAGTTGTGAACCGGTGGTGACTAGCGGTCAACACAATTTGACATCTGAGCATCCCCCACGAGATGCTAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCCCATGGTTGCATCGGTGTGGCAGCACGAGCCTGTGGCCTGGTGGGTCTAGAGCCTACTAGGGTTGCAGAAATCCTCAAGGATAGGCTGTCGTGGTTCCGCGACTGCCGAGCTTTGGATGTGCTTAACGTGCTGCCTACTGCGAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTCTATGCGCCGACAACTTTGGCGCCTGCTCGTGACTTCTGGTTGTTACGCTATACTTCTGTTCTTGAAGATGGTAGCCTTGTGGTTTGTGAGAGATCTCTTAAAAACACTCAGAATGGTCCCACCATGCCAGCTGTGCAACATTTTGTTAGAGCAGAAATGATGCCTAGTGGCTATCTGATACGCCCATGTGAAGGGGGCGGGTCAATCATACACATCGTTGATCACATGAATTTGGAGCCATGGAGTGTGCCTGAGGTATTGCGTCCATTGTATGAATCATCAACTGTTCTTGCTCAGAAGACAACTATGGCTGCTCTACGCCAGCTTAGGCAGATAGCTCATGAGGTCTCTCAGTCTAATGTATCTGGGTGGGGCAGACGTCCTGCAGCCCTACGAGCGCTTAGTCAGAGGTTGACCAGGGGTTTTAACGAGGCACTTAATGGGTTTATCGATGAGGGATGGTCAGTGATGGGAAATGATGGCATGGATGATGTAACCATTCTTGTGAACTCATCTCCTGATAAACTAATGGGTTTAAACCTCTCGTTTTCAAATGGATTCTCTCCTGTTAGCAATGCTGTTTTATGTGCCAAAGCATCCATGCTCTTGCAGAATGTACCGCCTGCAATCCTACTGAGGTTCCTAAGGGAGCATAGGTCAGAATGGGCCGACAGTAACATTGATGCTTACTCAGTTGCAGCCATTAAAGTCGGCCCCTGTAGCTTACCCGGCTCTCGAGTCGGAAGCTTTGGAAGTCAAGTAATACTTCCTCTAGCTCATACCATTGAACATGAAGAGTTTCTGGAAGTAATTAAGTTAGAAGGTATTGGCCATTCCCCTGAAGAAGCCATGATACCTAGAGAAATGTTTCTCTTGCAACTATGCAGTGGGATGGATGAAAATGCAGTAGGCACTTGTGCTGAACTAATATTTGCACCAATAGATGCCTCTTTTGCTGATGATGCACCTCTTCTCCCTTCAGGTTTTCGAATCATACCTCTCGACTCTGGCAAGGAAGCCTCTAGCCCAAATCGTACCCTTGACCTTGCTTCTGCGCTTGAAATTGGGCCCACTGGAAATAAATCGTCAAGTGATTACAGTGGAAGTTCTGGGTGTACAAGATCTGTAATGACGATAGCATTTGAATTTGCATTTGAGAGCCACATGCAAGACCATGTCGCTTCAATGGCTCGCCAATATGTTCGCAGCATTATATCCTCCGTTCAACGAGTAGCCTTAGCTCTGTCTCCTTCCCATTTGAGTTCTCAAGCGGGTTTGCGGTCTCCACTTGGTACACCTGAAGCTCAAACACTTGCTAGCTGGATATGCAACAGTTATCGATGCTATTTGGGTGTGGAGCTGCTCAAATCAGGGAATGAAGGGAATGAGTCTGTTCTTAAGACATTATGGCATCACTCTGATGCAATCATGTGCTGCTCATTGAAGGCACTACCAGTTTTCACCTTTGCAAACCAGGCCGGGCTTGATATGCTCGAGACCACATTGGTCGCACTACAAGACATAACTTTGGAGAAAATATTTGATGATCATGGAAGAAAGACTCTCTGCACCGAGTTTCCACAGATAATGCAACAGGGTTTTGCTTGTCTTCAAGGAGGGATTTGTTTGTCAAGCATGGGGCGACCGGTTTCGCATGAAAGAGCAGTGGCTTGGAAGGTGCTGAATGAGGAGGAGAATGCACACTGTATCTGCTTCATGTTTGTGAACTGGTCTTTCATTTGA 2517 47.0 MAMSCKDGFKGVMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTLATKDASCEPVVTSGQHNLTSEHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCIGVAARACGLVGLEPTRVAEILKDRLSWFRDCRALDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNTQNGPTMPAVQHFVRAEMMPSGYLIRPCEGGGSIIHIVDHMNLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQIAHEVSQSNVSGWGRRPAALRALSQRLTRGFNEALNGFIDEGWSVMGNDGMDDVTILVNSSPDKLMGLNLSFSNGFSPVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADSNIDAYSVAAIKVGPCSLPGSRVGSFGSQVILPLAHTIEHEEFLEVIKLEGIGHSPEEAMIPREMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPTGNKSSSDYSGSSGCTRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRSPLGTPEAQTLASWICNSYRCYLGVELLKSGNEGNESVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCTEFPQIMQQGFACLQGGICLSSMGRPVSHERAVAWKVLNEEENAHCICFMFVNWSFI 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 733744 740309 - Conep17aG0014400.1 Cone17ag0143 455620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0143 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
Cone17ag0143 838 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
Cone17ag0143 838 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
Cone17ag0143 838 Coils Coil 72 106 - -
Cone17ag0143 838 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Cone17ag0143 838 SUPERFAMILY Bet v1-like 160 371 - -
Cone17ag0143 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 838 IPR044830 GO:0003700(InterPro)
Cone17ag0143 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
Cone17ag0143 838 CDD bZIP 69 108 - -
Cone17ag0143 838 Pfam MEKHLA domain 695 837 IPR013978 -
Cone17ag0143 838 CDD START_ArGLABRA2_like 155 371 - -
Cone17ag0143 838 Gene3D - 197 379 IPR023393 -
Cone17ag0143 838 Gene3D - 10 83 - -
Cone17ag0143 838 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
Cone17ag0143 838 ProSiteProfiles START domain profile. 151 366 IPR002913 GO:0008289(InterPro)
Cone17ag0143 838 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
Cone17ag0143 838 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Cone17ag0143 838 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0143 Cone-Chr17:733744 Cone20ag0590 Cone-Chr20:3410290 0 dispersed
Cone20ag1266 Cone-Chr20:8282202 Cone17ag0143 Cone-Chr17:733744 0 transposed
Cone17ag0143 Cone-Chr17:733744 Cone17ag1132 Cone-Chr17:8371084 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45008 PF00076 RRM_1 2.30E-09 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0143 K09338 - csv:101213106 1582.39