Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0153 ATGACAAATCCAATCAACAATGCAGAAGAACAAGCTCAGAGCACAATCACTAGCAACTCATCAATGGCGGCGAAACCACTGCCGAACAGGAAAAGAGCAGGAGATGATCATAGTACTATGATTTGTAACTACAACAGCAGCAGCAGCAGCAACAAGCATCCTGTATACAGGGGAGTGAGGATGAGGAGTTGGGGCAAATGGGTTTCGGAAATCCGTGAGCCGCGCAAGAAATCCCGTATTTGGCTCGGCACTTTCTCCACACCGGACATGGCGGCGCGTGCCCACGATGTCGCGGCACTGAGCATTAAAGGGGATTCTGCGCGTGCAATTCTGAATTTCCCGGAACTCGCTGAGATCTTACCTCAGCCCGCGTCGTTAATGCCGCGCGACATTCAGTCGGCTGCTGCCAAAGCGGCCAGGATGGTTGTCAACTTTGACTCAGCCGCCACGTCATCATCATCTTCTTCTTCGGCTGTGGGTTGTGCAGATTCTGGTGATCATGATGATCAGGAGCTGGGGGAGATTGTTGAGTTGCCGAATATAGAAGGGAGCTGTGAATTGACCGAGTTGAACCCGAAGGAATTTATATGGGTTGACTCGGTGGATGCAGGGTGGGTGTACCCTCCTCCGCCATGTGCGGCGGAGGTGGCAGCTGAATTCTGGCCGGGTGAAGAGAGTTTGATTATTAACAGTAGCTTTAGAGGTCTTGGGTGGGACTAA 720 51.94 MTNPINNAEEQAQSTITSNSSMAAKPLPNRKRAGDDHSTMICNYNSSSSSNKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFSTPDMAARAHDVAALSIKGDSARAILNFPELAEILPQPASLMPRDIQSAAAKAARMVVNFDSAATSSSSSSSAVGCADSGDHDDQELGEIVELPNIEGSCELTELNPKEFIWVDSVDAGWVYPPPPCAAEVAAEFWPGEESLIINSSFRGLGWD 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 766808 767694 - Conep17aG0015400.1 Cone17ag0153 455630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0153 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 185 IPR051032 -
Cone17ag0153 239 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677(InterPro)
Cone17ag0153 239 ProSiteProfiles AP2/ERF domain profile. 55 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0153 239 SMART rav1_2 55 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0153 239 Pfam AP2 domain 54 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0153 239 MobiDBLite consensus disorder prediction 1 48 - -
Cone17ag0153 239 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0153 239 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0153 239 CDD AP2 56 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0153 239 MobiDBLite consensus disorder prediction 1 25 - -
Cone17ag0153 239 FunFam Ethylene-responsive transcription factor 2 54 115 - -
Cone17ag0153 239 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0153 Cone-Chr17:766808 Cone20ag0599 Cone-Chr20:3503235 5.86E-53 dispersed
Cone17ag0153 Cone-Chr17:766808 Cone17ag1123 Cone-Chr17:8317270 1.98E-51 wgd
Cone17ag0153 Cone-Chr17:766808 Cone20ag1260 Cone-Chr20:8254933 5.83E-132 wgd
Cone17ag0153 Cone-Chr17:766808 Cone4ag0772 Cone-Chr4:4457176 6.04E-53 wgd
Cone17ag0153 Cone-Chr17:766808 Cone7ag1181 Cone-Chr7:8804049 2.34E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45010 PF00071 Ras 1.00E-65 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0153 K09286 - rcu:8274535 200.29