Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0165 ATGGGCGTGGACATGTCGAACAAACAGCAACCGCCTTCTCTTACCAAAGACTTCTTCGCCGCCTCCCCTGCTCTCTCTCTTAGCCTTGCTGGGATTTTCCGTCATGCCGGAGAGGCGGCGGCTGTGGCCAACATGGAGGTGGAAGAAGGAGATGAGGGGAGTGGAGGAGGAAGGGGAAGGAGAGAAGACAGTGCGCTTGAGATTAGCAGTGAGAATTCGGCAGGAGGGCTCGTGAGATCCAGATCAGATGATGATATTGATGGAGAAGGAGACCAAGATGATGATGAAGATGGAGACAATAACAGCAATAAGAAGAAGAAGAGGAAAAAATATCACAGACACACTACTGAGCAAATCAGAGAAATGGAAGCGTTGTTCAAAGAATCACCTCATCCAGATGAGAAACAAAGGCAGCAACTCAGCAAGAAATTAGGCCTTGCTCCTAGACAGGTCAAGTTCTGGTTCCAAAATCGTCGAACCCAAATTAAGGCAATACAAGAACGACACGAAAACAGTTTGTTCAAAACAGAGATGGAGAAGCTAAGAGAGGAAAACAAAGCCATGAGAGAGATCATAAACAAAGCATGTTGCCCCAACTGTGGCACTTCTACCCCTAGTAAAGACAGTCCTCTCTTGACCTCAACCGAGGACCAACAACTCCTTATAGAAAATGCACGTCTCAAAGCCGAGGTGGAAAAACTTCGAGCAGCGATAGGAAAATATCTTCCGGGGACAACTTCGGGTAATTCTTCATGCACGGCTGAAAACGATTCGGAAAACAGGACAACCTTAGATTTTTATACCGGTATCTTTGTCTTAGAGAAGCCAAGGATAATGGAGTTAGTTAATCGAGCAATGGAGGAGCTGATCAAGATGGCTACTACTAACGAACCGCTTTGGGTTCGAAGCGTTGAGACCGGACGAGAAATTCTGAACTATGACGTGTACATGAAAGAGTTCCCGGGAGAAAATTTGAGCAGTGGTGGGCCCAAGAGATCCATTGAAGCCTCGAGAGAGACCAGTGTTGTGTTTATGGATCTTCCTCGGCTCGTTCAGAGTTTCATGGATGTGAACCAATGGAAGGAGATGTTTCCATGTATGATCTCCAAGGCAGCTGCTGTTGATGTTATTTGCAATGGTGAAGGTGTCAACAAGAATGGTGCAGTCCAACTGATGTTTGCAGAGCTGCAAATGCTTACGCCAATGGTGCCAACAAGAGAGGTGTACTTCATCCGATTTGGCAAGCAACTTGGTCCTGAACAATGGGCAATTGTTGATGTTTCGATCGATAAAGTTGAAGATAATATCGACGCGTCCTTGGTGAAATGTCGGAAACGCCCCTCTGGTTGCATCATTGAGGACAAGTCAGATGGCCACTGCAAGGTGATTTGGGTGGAGCACTTGGAATGCCAGAAATCCCCACTTCACACAATGTACAGAACAATTGTTAACAGTGGTGTAGCCTTTGGGGCAAGGCATTGGATGGCTACTCTGCAACTACAATGCGAACGCCTTGTTTTCTTCATGGCCACAAATGTCCCCATGAAGGATTCAACCGCTGTTGGAGCACTAGTTGGGAGGAAGAGCATTTTGAAGCTGGCTCAAAGAATGACATCTACTTTCTGTCAAGCAATAGGAGCATCAAGCTATCATTCATGGACCAAGGTTGCAAGTAAAACAGGGGAGGATATAAGAATCGCTTCTCGGAAAAACTTGAACGACCCGGGAGAGCCGCTAGGGGTGATCTTGTGTGCTGCTGCTTCTGTCTGGTTGCCCGTTTCTCCTCGAACCCTTTTCGATTTCTTGAGAGATGAATCTCATAGATCTGAGTGGGATGTTTTGTCAAACAATGGGACGGCACAAACGGTTGCGAACTTAGCCAAAGGACAAGATCGGGGAAATGCCGTAGCCATCCAAGAGGTGAAATCGAAAGAAAAGACATCGTGGGTACTTCAAGACACCTTTACAAATCCTTATGAGTCAATGGTGGTCTATGCTCAAGTGGACATGACCGGGATGAAGTCCGTAATGACTGGGTGTGACTCGGGGAACATAGCGGTATTACCTTCCGGGTTCTCAATTCTTCCAGATGGGGTCGAATCAAGACCGCTAGTCATCACTTCTAGGCAAGAAGAGAGGAGCACAGAAGGATCTGGATCTTTGCTCACAATAGCATTCCAAATCTTGACCAATTCCTCTCCTACAGCTAAACTAACCACGGACTCTATGGAGTATGTTGACAGTGCCATATCATCTACTTTGAGAAGTATTCGGACAAGCTTGCAGTGCGAAGATGAGTGA 2301 46.54 MGVDMSNKQQPPSLTKDFFAASPALSLSLAGIFRHAGEAAAVANMEVEEGDEGSGGGRGRREDSALEISSENSAGGLVRSRSDDDIDGEGDQDDDEDGDNNSNKKKKRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKKLGLAPRQVKFWFQNRRTQIKAIQERHENSLFKTEMEKLREENKAMREIINKACCPNCGTSTPSKDSPLLTSTEDQQLLIENARLKAEVEKLRAAIGKYLPGTTSGNSSCTAENDSENRTTLDFYTGIFVLEKPRIMELVNRAMEELIKMATTNEPLWVRSVETGREILNYDVYMKEFPGENLSSGGPKRSIEASRETSVVFMDLPRLVQSFMDVNQWKEMFPCMISKAAAVDVICNGEGVNKNGAVQLMFAELQMLTPMVPTREVYFIRFGKQLGPEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSDGHCKVIWVEHLECQKSPLHTMYRTIVNSGVAFGARHWMATLQLQCERLVFFMATNVPMKDSTAVGALVGRKSILKLAQRMTSTFCQAIGASSYHSWTKVASKTGEDIRIASRKNLNDPGEPLGVILCAAASVWLPVSPRTLFDFLRDESHRSEWDVLSNNGTAQTVANLAKGQDRGNAVAIQEVKSKEKTSWVLQDTFTNPYESMVVYAQVDMTGMKSVMTGCDSGNIAVLPSGFSILPDGVESRPLVITSRQEERSTEGSGSLLTIAFQILTNSSPTAKLTTDSMEYVDSAISSTLRSIRTSLQCEDE 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 813315 817699 + Conep17aG0016700.1 Cone17ag0165 455642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0165 766 MobiDBLite consensus disorder prediction 51 67 - -
Cone17ag0165 766 Coils Coil 171 191 - -
Cone17ag0165 766 CDD homeodomain 112 163 IPR001356 GO:0003677(InterPro)
Cone17ag0165 766 SUPERFAMILY Bet v1-like 274 504 - -
Cone17ag0165 766 Pfam START domain 281 504 IPR002913 GO:0008289(InterPro)
Cone17ag0165 766 SMART HOX_1 107 169 IPR001356 GO:0003677(InterPro)
Cone17ag0165 766 CDD START_ArGLABRA2_like 275 503 - -
Cone17ag0165 766 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone17ag0165 766 SMART START_1 280 504 IPR002913 GO:0008289(InterPro)
Cone17ag0165 766 ProSiteProfiles START domain profile. 271 507 IPR002913 GO:0008289(InterPro)
Cone17ag0165 766 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 96 764 IPR042160 -
Cone17ag0165 766 Coils Coil 217 237 - -
Cone17ag0165 766 MobiDBLite consensus disorder prediction 44 116 - -
Cone17ag0165 766 SUPERFAMILY Homeodomain-like 96 166 IPR009057 -
Cone17ag0165 766 FunFam Homeobox-leucine zipper protein HDG1 92 181 - -
Cone17ag0165 766 FunFam Homeobox-leucine zipper protein GLABRA 2 280 503 - -
Cone17ag0165 766 Pfam Homeodomain 108 163 IPR001356 GO:0003677(InterPro)
Cone17ag0165 766 Gene3D - 94 179 - -
Cone17ag0165 766 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677(InterPro)
Cone17ag0165 766 SUPERFAMILY Bet v1-like 534 734 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0165 Cone-Chr17:813315 Cone18ag1103 Cone-Chr18:8049457 8.93E-187 dispersed
Cone16ag0698 Cone-Chr16:8232493 Cone17ag0165 Cone-Chr17:813315 6.33e-311 wgd
Cone17ag0165 Cone-Chr17:813315 Cone20ag1249 Cone-Chr20:8207072 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45011 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0165 K09338 - vvi:100256623 1115.91