Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0178 ATGGATTTCTGGCCAGAGTTTCTCGCTAGCAGTTGGGGCAAAGAGTTCGTGGCAGGCGGCTGTGGGGGCATTGCTGGAATCATCTCAGGCTACCCACTCGACACTCTTCGAATCAAACAACAACAAAACTCCAATTCTGGTTCCGCCATTTGCATCCTTCGCAAGGTCATCTCCTCAGAAGGCCCTGCCGGTCTCTATAGAGGCATGGCCGCCCCCTTAGCTTCCGTCACCTTTCAGAACGCCATGGCGTTCCAGATCTACGCCGTCCTGTCACGAGCACTAGACTCATCCGTTCCGGCCTCGGAACCGCCGTCCCTAAAAGGTGTCGCTCTCGCCGGAATCAGTACCGGAGCGATTCAAAGCCTCGTACTAACTCCCGTTGAGCTTATAAAAATCCGTCTCCAATTACAAACCTCAAACCCTAACCCGACCCCAACAACTCACCTTCTACCGCCTCAAACGGGCCCACTCAACGTCTCAAAAGCCATCCTCAAGACAGAGGGATTAAAAGGTATGTACAGAGGCCTCGCCATAACCGTGCTACGAGATGCTCCTTCCCATGGCGTCTACTTCTCGACTTACGAGCTTATGAGAGAGATGCTTCATCCCGGTTGCCGGAAGGGCGGGGAGGAGAGCGTGAGGACGATGCTTGTGGCTGGTGGGCTGGCCGGAGTGGCGAGCTGGGTTTGTTGTTACCCGTTGGACGTGGTGAAGACGAGGTTGCAGGCCCAATCGGGCTTTGGGCCGAGGAAGTATAGTGGGATTGTGGACTGTTTGAGAAAGAGTGTGAGGGAAGAGGGCTTTAGAGTTTTGTGGAGAGGTTTGGGAACTGCAGTTGCTAGAGCGTTTGTGGTTAATGGGGCGATTTTTACTGCGTATGAGACTGCTTTGAGTTGGGGTCAAGAATTTGTAGCAGGTGGGTGTGGAGGCATTGCCGGAATAATCTCCGGCTATCCACTTGACACTCTTCGTGTCAAACAACAACACTCAAGTTCCGGTTCTGCTCTCATGATCCTCCGAAATGTAGTCACTGCAGAAGGACCTACTGCCCTCTATAGAGGCATGGCTGCCCCTTTGGCTTCCGTCGCTTTTCAGAATGCTGTGGCATTTCAAATCTATGCAGTCCTTTCTCGAAAACTTGATCCTCCTGTTTCAGCCAGTGATCCACCTTCTTTTAAAGGAGTAAGTCTTGGAGGATTCGGAACTGGAGCACTACAGAGCTTTCTGTTAACTCCAGTAGAGCTTATAAAAATTCAACTCCAATTGCAGAGCACAAGAAATAAAGAACTAGTATCTCCAACAGGTCCTATCAATGTTGCTAAACGCATCCTCAAAGCAGAAGGGTTAAAGGGTTTATATCGAGGTTTTACCATAACTGTCTTCCGTGATGCTCCTGCCCACGCTGTCTACTTCTGGACCTATGAGTATATGAAAGAGCAGCTTCACCCGGGTAGTAGAAAGAATGGAGGGGAGAGCTTGGGAACTACTTTGTTAAGTGGAGGGTTGGCAGGGGTTGCTAGCTGGGTTTGCTGTTATCCATTAGATGTCGTGAAGACAAGATTGCAGGCTCAATCAAAGTCTTTCCCGGGAAAATATGATGGGATTGTCGATTGTTTTCGGAAGAGTGTAAGAGAAGAGGGGGCCAGAGTGCTTTGGAGAGGACTAGGAACGGCAGTGGCTAGAGCATTTGTGGTAAATGGTGCGATCTTTGCTGCCTATGAGACAGCTTTGAGGTGCATTAACACCAATAGAGGTCTTTAG 1761 50.14 MDFWPEFLASSWGKEFVAGGCGGIAGIISGYPLDTLRIKQQQNSNSGSAICILRKVISSEGPAGLYRGMAAPLASVTFQNAMAFQIYAVLSRALDSSVPASEPPSLKGVALAGISTGAIQSLVLTPVELIKIRLQLQTSNPNPTPTTHLLPPQTGPLNVSKAILKTEGLKGMYRGLAITVLRDAPSHGVYFSTYELMREMLHPGCRKGGEESVRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSGFGPRKYSGIVDCLRKSVREEGFRVLWRGLGTAVARAFVVNGAIFTAYETALSWGQEFVAGGCGGIAGIISGYPLDTLRVKQQHSSSGSALMILRNVVTAEGPTALYRGMAAPLASVAFQNAVAFQIYAVLSRKLDPPVSASDPPSFKGVSLGGFGTGALQSFLLTPVELIKIQLQLQSTRNKELVSPTGPINVAKRILKAEGLKGLYRGFTITVFRDAPAHAVYFWTYEYMKEQLHPGSRKNGGESLGTTLLSGGLAGVASWVCCYPLDVVKTRLQAQSKSFPGKYDGIVDCFRKSVREEGARVLWRGLGTAVARAFVVNGAIFAAYETALRCINTNRGL 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 849799 854126 - Conep17aG0018000.1 Cone17ag0178 455655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0178 586 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 8 298 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Cone17ag0178 586 Gene3D Mitochondrial carrier domain 302 584 IPR023395 -
Cone17ag0178 586 Gene3D Mitochondrial carrier domain 13 301 IPR023395 -
Cone17ag0178 586 PRINTS Mitochondrial carrier protein signature 500 522 IPR002067 GO:0055085(InterPro)
Cone17ag0178 586 PRINTS Mitochondrial carrier protein signature 453 471 IPR002067 GO:0055085(InterPro)
Cone17ag0178 586 PRINTS Mitochondrial carrier protein signature 302 315 IPR002067 GO:0055085(InterPro)
Cone17ag0178 586 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 299 IPR018108 -
Cone17ag0178 586 SUPERFAMILY Mitochondrial carrier 11 294 IPR023395 -
Cone17ag0178 586 ProSiteProfiles Solute carrier (Solcar) repeat profile. 390 480 IPR018108 -
Cone17ag0178 586 ProSiteProfiles Solute carrier (Solcar) repeat profile. 491 579 IPR018108 -
Cone17ag0178 586 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 200 IPR018108 -
Cone17ag0178 586 Pfam Mitochondrial carrier protein 110 202 IPR018108 -
Cone17ag0178 586 Pfam Mitochondrial carrier protein 492 581 IPR018108 -
Cone17ag0178 586 Pfam Mitochondrial carrier protein 297 379 IPR018108 -
Cone17ag0178 586 Pfam Mitochondrial carrier protein 11 94 IPR018108 -
Cone17ag0178 586 Pfam Mitochondrial carrier protein 212 296 IPR018108 -
Cone17ag0178 586 Pfam Mitochondrial carrier protein 397 482 IPR018108 -
Cone17ag0178 586 ProSiteProfiles Solute carrier (Solcar) repeat profile. 300 379 IPR018108 -
Cone17ag0178 586 SUPERFAMILY Mitochondrial carrier 297 574 IPR023395 -
Cone17ag0178 586 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 93 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0178 Cone-Chr17:849799 Cone20ag1234 Cone-Chr20:8171942 1.36E-182 dispersed
Cone17ag0178 Cone-Chr17:849799 Cone20ag1233 Cone-Chr20:8169237 6.03E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0178 K15109 - rcu:8274512 453.366