Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0187 ATGGGTGTGAATTCAAACAGAGTAGAAAGCTTTGAATGTCTTGAAACGTCAGTTCGGATCCCGCCGGAGTTAGAAGCTGAAACAGCGTCATCGCCTGAGATTCACAGAGTTTGCTTGCCTCCTAAGCAGAATACGCTTCAGAAACTGAAACACAGACTGTCTGAAGTGTTCTTTCCCGACGACCCACTTCACCGATTCAAGAACCAGACTTGGGCCCAGAAACTCCTTCTGGGACTTCAGTTCTTCTTTCCCATCTTCCAATGGGGCCCAGAATACAGTCTAGGCCTCCTCAAATCCGACGTCATCTCCGGTCTCACCATTGCCAGCCTCGCCATCCCTCAAGGAATCAGTTATGCAAAGCTTGCGAATTTGCCGCCAATTGTGGGACTATATTCAAGCTTTGTGCCGCCATTGATCTATTCACTACTAGGAAGCTCGAGGCATCTGGCAGTGGGCCCAGTTTCAATTGCTTCACTGGTAATGGGCTCAATGCTAAGCGAGAAGGTGTCTTTTACCGACGAACCGATTCTGTATCTCAAACTGGCCTTCACGTCCACCTTCTTCGCCGGCATTTTCCAGGCTTCCTTGGGTTTTCTAAGGTTAGGATTTGTTATCGATTTTCTGTCAAAAGCGACGCTGGTTGGCTTTATGGCGGGAGCAGCAGTCATTGTGTCGTTGCAACAGCTAAAAGGGTTGCTTGGAATTGTTCATTTCACTACCAAAATGCAATTCGTCCCTGTTATGGCCTCTGTTTTTAGCCACAAAGATGAATGGTCATGGCAGACAATTGTGTTAGGCTTCAGTTTCCTACTCTTTCTTCTAACGACGAGGCATATTAGCATGAGGAATCCAAAGTTGTTCTGGGTTTCAGCTGCAGCTCCATTAACATCAGTCATCCTCTCAACAATTATCGTCTTTCTCTTAAGATCTAAAGTTCACGCAATCTCAGTTATTGGTCACTTGCCAAAAGGCCTGAATCCTCCATCTTCAAACATGCTCTTATTCACCGGCTCACAGCTCGCCCTCGCTATCAAAACCGGAATTGTTACCGGAATTCTCTCTCTCACCGAAGGAGTAGCAGTGGGAAGAACATTTGCATCCTTAAAAAACTACCAAGTGGATGGAAACAAAGAAATGATGGCAATAGGTATAATGAACATGGCCGGTTCATGCTCTTCGTGCTTTGTCACGACAGGATCCTTTTCCCGATCAGCCGTGAACTACAATGCAGGGGCAAAAACAGCAGTTTCAAACGTGATTATGTCGGCTGCTGTGCTTGTAACTCTGCTCTTTCTAATGCCGTTATTCCGTTACACTCCAAATGTTATCTTAGCTGCCATCATTATAACAGCCGTGATCGGACTAATCGACTATCAAACCGCTTTTCGGTTCTGGAAAGTAGACAAGATCGATTTCTTAGCCTGTCTCTGTTCTTTCTTCGGTGTTCTCTTCATTTCCGTCCCGCTCGGTCTTTCCATTGCAGTTGGTATCTCTGTTTTTAAGATTCTGCTTCATGTTACGAGGCCGAATACAATGGTGTTAGGGAATATTCCCGGAACGAAAATATACCATAGCTTGATTCGATATAGGGAGGCGTTGAGGATTCCCTCGTTTCTCATACTTGCTGTTGAGTCTCCTTTCTACTTTGCCAATTCAACTTACCTCCATGAAAGGATCTTAAGATGGGTTAGGGAGGAAGAAGAGTGGATTAAGGAAAACAATGAGAGTTCATTAAAATGTGTGATCTTGGACATGACAGCCGTGACAGCTATAGATACAAGTGGATTAGAGACAGTACGTGAACTTAGAAAGATACTAGAGAAGAGATCACTTCAGCTTGTGCTGGCAAATCCTGTTGGAAGTGTGACGGAGAAACTAAACCAATCAAAAGTGTTGGAGTCGTTTGGATTGAATAGCCTCTATCTTTCTGTTGGAGAAGCTGTGTCTGATATTTCTTCTTCATGGAAGCAACCTCAGCCTTAA 1983 44.73 MGVNSNRVESFECLETSVRIPPELEAETASSPEIHRVCLPPKQNTLQKLKHRLSEVFFPDDPLHRFKNQTWAQKLLLGLQFFFPIFQWGPEYSLGLLKSDVISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSLLGSSRHLAVGPVSIASLVMGSMLSEKVSFTDEPILYLKLAFTSTFFAGIFQASLGFLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTTKMQFVPVMASVFSHKDEWSWQTIVLGFSFLLFLLTTRHISMRNPKLFWVSAAAPLTSVILSTIIVFLLRSKVHAISVIGHLPKGLNPPSSNMLLFTGSQLALAIKTGIVTGILSLTEGVAVGRTFASLKNYQVDGNKEMMAIGIMNMAGSCSSCFVTTGSFSRSAVNYNAGAKTAVSNVIMSAAVLVTLLFLMPLFRYTPNVILAAIIITAVIGLIDYQTAFRFWKVDKIDFLACLCSFFGVLFISVPLGLSIAVGISVFKILLHVTRPNTMVLGNIPGTKIYHSLIRYREALRIPSFLILAVESPFYFANSTYLHERILRWVREEEEWIKENNESSLKCVILDMTAVTAIDTSGLETVRELRKILEKRSLQLVLANPVGSVTEKLNQSKVLESFGLNSLYLSVGEAVSDISSSWKQPQP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 889603 892614 + Conep17aG0019000.1 Cone17ag0187 455664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0187 660 ProSiteProfiles STAS domain profile. 528 651 IPR002645 -
Cone17ag0187 660 Gene3D STAS domain 508 653 IPR036513 -
Cone17ag0187 660 FunFam Sulfate transporter 31 508 654 - -
Cone17ag0187 660 ProSitePatterns SLC26A transporters signature. 126 147 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cone17ag0187 660 NCBIfam sulfate permease 84 647 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0187 660 Pfam Sulfate permease family 97 476 IPR011547 GO:0016020(InterPro)
Cone17ag0187 660 Pfam STAS domain 530 647 IPR002645 -
Cone17ag0187 660 CDD STAS_SulP_like_sulfate_transporter 529 644 - -
Cone17ag0187 660 PANTHER SULFATE TRANSPORTER 69 650 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0187 660 SUPERFAMILY SpoIIaa-like 533 649 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0761 Cone-Chr13:7181430 Cone17ag0187 Cone-Chr17:889603 3.30E-283 dispersed
Cone17ag0187 Cone-Chr17:889603 Cone19ag0765 Cone-Chr19:6216865 2.74E-277 dispersed
Cone16ag0684 Cone-Chr16:8169836 Cone17ag0187 Cone-Chr17:889603 0 wgd
Cone17ag0187 Cone-Chr17:889603 Cone2ag0336 Cone-Chr2:1768979 4.19E-149 wgd
Cone17ag0187 Cone-Chr17:889603 Cone20ag1225 Cone-Chr20:8126898 0 wgd
Cone17ag0187 Cone-Chr17:889603 Cone7ag0674 Cone-Chr7:3672639 2.04E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0187 K17471 - cit:102621812 1066.22