Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0200 ATGAGAGAAAAAGAAAATACAATCACTGCTAATGGCAGAATAACACGGGCTCGAGCTGCTACATTTCGAGCCCAGGTCCATCCTACTACACAAGAACCTCCACAGCAGAATCAAAAGCAGGTTTTACGAATTAGTTCCAAAAGAGCAGCCTCTGATGAAAACAAAGCCAATTCTACGACTAATTGTATATATCTGCAGTGTAAGAAAAGGGCAGTGCTTGAAGATGTAACAAATATTTGCTGTGAACCTTCATACAAGAAGTGCTTTAATGCAGCTAAAATTCAGGTTACAAAAAGAAAGCAGACTAGGAAAGTTCAGGTCAAGGAACAGTTTGAAGCTGATTTGACAGGAGAGTGTGTGCAAGTAGGAACAGTTAAAACCGAAAATGAACCAGGAGAAGTTGATGAGCACCCAATTCATTTGTTAGATCAAAACAAAGCCCCTCAAATAGGTACTACAAAAGAGGGTGATACATATGATGACTGGCTTAGAAGTAAAACACTCCAAAATAGTTTGCAACCCCATGATACAAGCAACAAAGAAGGAGGAGGCCGTCTTGGGACCATATCAAGCAACCCTGACATAAAGGATATCGATTCAGACACCAAGGATCCTCAACTTTGCAGCGTCTATGCACCCGAAATCTATACCAATTTACGTGCTAATGAGCTTTCTAAAAGGCCACATCTGAATTTCATGGAAACAATTCAACGAGATATAACCCCATTTATGCGGGGAGTCTTGGTCGATTGGCTTGTTGAGGTTTCAGAGGAATACAACTTGGTTTCAGACACGCTGTTCTTAACAACATATCTGATAGATTGGTTTCTCTCTAAAAATTACATTGAAAGGCAAAAACTTCAGCTTTTGGGCATCACTTGCATGCTGATTTCCTCGAAATTTGAAGAAATTTGTGCACCGCGTGTTGAAGAGTTTTGCTTTATCACAGACAATACCTACACCAAAGAGGAGGTGTTGAAAATGGAAGATCAAGTATTGAAGCACATCGGCTTTCAACTTTTTTCACCAACCACAAAAGCTTTTCTCAGGAGATTTCTACTAGCTGCTCAAGCTTCATATAAGACCCCTAGTCTTGAATTGGAGTTCTTAGCCAATTATCTAGCCGAGCTCACGTTAATGGACTACGGTTTCTTGAATTTCCTTCCTTCTATTGTTGCTGCCTCGGCTGTTTTCCTTTCCAAATGGACATTAGATCAATCTAATCACCCATGGAATGCAACACTAGAACACTATACTTCATACAAGGGATCCGATTTAAAAGCTGCAGTTCTTGCTCTACGAGATTTGCAGATGAACACGAGTGACTCCCCTCTTGGTGCTATACGGAAAAAGTATCGGCAAGAAAAGTTTAAATCTGTTGCTGTTTTTTCTTCCCCAAAACTGATCGAGACTCTGTTCTAG 1422 40.37 MREKENTITANGRITRARAATFRAQVHPTTQEPPQQNQKQVLRISSKRAASDENKANSTTNCIYLQCKKRAVLEDVTNICCEPSYKKCFNAAKIQVTKRKQTRKVQVKEQFEADLTGECVQVGTVKTENEPGEVDEHPIHLLDQNKAPQIGTTKEGDTYDDWLRSKTLQNSLQPHDTSNKEGGGRLGTISSNPDIKDIDSDTKDPQLCSVYAPEIYTNLRANELSKRPHLNFMETIQRDITPFMRGVLVDWLVEVSEEYNLVSDTLFLTTYLIDWFLSKNYIERQKLQLLGITCMLISSKFEEICAPRVEEFCFITDNTYTKEEVLKMEDQVLKHIGFQLFSPTTKAFLRRFLLAAQASYKTPSLELEFLANYLAELTLMDYGFLNFLPSIVAASAVFLSKWTLDQSNHPWNATLEHYTSYKGSDLKAAVLALRDLQMNTSDSPLGAIRKKYRQEKFKSVAVFSSPKLIETLF 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 961179 963642 + Conep17aG0020300.1 Cone17ag0200 455677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0200 473 CDD CYCLIN_AtCycA-like_rpt2 343 457 - -
Cone17ag0200 473 CDD CYCLIN_AtCycA_like_rpt1 204 339 - -
Cone17ag0200 473 Pfam Cyclin, C-terminal domain 343 465 IPR004367 -
Cone17ag0200 473 MobiDBLite consensus disorder prediction 25 55 - -
Cone17ag0200 473 SUPERFAMILY Cyclin-like 343 468 IPR036915 -
Cone17ag0200 473 PANTHER CYCLINS 194 454 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone17ag0200 473 PIRSF Cyclin_A_B_D_E 2 472 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone17ag0200 473 SMART cyclin_7 250 334 IPR013763 -
Cone17ag0200 473 SMART cyclin_7 347 435 IPR013763 -
Cone17ag0200 473 FunFam Mitotic cyclin 6 228 328 - -
Cone17ag0200 473 Gene3D - 214 461 - -
Cone17ag0200 473 MobiDBLite consensus disorder prediction 171 186 - -
Cone17ag0200 473 Gene3D - 228 341 - -
Cone17ag0200 473 SMART Cyclin_C_2 343 466 IPR004367 -
Cone17ag0200 473 MobiDBLite consensus disorder prediction 171 198 - -
Cone17ag0200 473 Pfam Cyclin, N-terminal domain 214 340 IPR006671 -
Cone17ag0200 473 FunFam Cyclin A1 330 462 - -
Cone17ag0200 473 SUPERFAMILY Cyclin-like 203 340 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0200 Cone-Chr17:961179 Cone4ag1423 Cone-Chr4:11351242 5.04E-96 dispersed
Cone17ag0200 Cone-Chr17:961179 Cone20ag1212 Cone-Chr20:8063401 1.07E-289 wgd
Cone17ag0200 Cone-Chr17:961179 Cone4ag1826 Cone-Chr4:13192809 6.56E-137 wgd
Cone17ag0200 Cone-Chr17:961179 Cone7ag1730 Cone-Chr7:11463130 3.20E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0200 K06627 - rcu:8271347 521.546