Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0230 ATGGCTTTTTGCTCCATATTTTGCCTCGGAAGCTGTTCGGATCGGAAAAACAGAGGGAAGAAGCAGCAAACATGGAGGGTCTTTACGTTAAAGGAACTACACCTCGCTACAAACAATTTCAATTATGATAACAAGCTCGGAGAGGGCGGATTTGGTAGTGTCTATTGGGGTCAGCTTTCAGATGGGTCACAGATTGCAGTCAAGAGGTTGAAGGCCTGGAGCAGCAAAGCTGAACTAGAGTTCGCTGTAGAAGTCGAAATACTTGCTAGAGTTCGGCACAAGAACCTACTAAGTCTACGTGGCTATTGTGTTGAAGGTCAAGAACGTTTGATCGTATATGAGTTCATGCCCAATTTGAGCTTACTTTCCCATCTTCATGGCCTGCATTCTGCAGAGTGCCTTCTCAATTGGAACCGTCGGATGAAAATTGCCATCGGGTCTGCAGAGGGAATTTCTTATCTTCACCACCAAGCAACACCACATATAATTCACAGAAATGTAAAAGCAAGTAATGTGTTGCTAGATTCGGACTTTCAGGCTCGGGTGGCTGATTTTGGGTTTGCAAAGCTGGTCCCAGATGGTGCGACCCATGTGACTACTAATGTTAAGGGCACTCTAGGTTACCTTGCTCCAGAATATGCTATGCTAGGGAAAGCGTCTGAGAGCTGTGATGTTTACAGCTTTGGAATCCTCTTGCTCGAGCTTGCAAGTGGGAAGAGACCAATCGAGAAAAAGAATGCAGGGGTGCAACTGACTATTACAGATTGGGCCTTGCCATTGGCTTGTGAGAGGAAGTTTGGTGAATTAGCTGATCTGAAGTTGGGTGGAGATTATGTAGAGGAAGAGCTGAGAAGAGTTGTGCTTGTTGCTTTAGTTTGTTCCAATTCTCAGCCTGAGAAGAGACCTACTATGATTGAGGTGGTGGAGCTTCTAAAGGGAGAGGCTAGAGAGAAATTGGCGAAATTGGAAGAGAACGAGATATTTAAGAATTCAGAGGTAGTTGAGAATCATAATAATGAGGTTTCTATTACTGAAGATGGCTAG 1044 44.54 MAFCSIFCLGSCSDRKNRGKKQQTWRVFTLKELHLATNNFNYDNKLGEGGFGSVYWGQLSDGSQIAVKRLKAWSSKAELEFAVEVEILARVRHKNLLSLRGYCVEGQERLIVYEFMPNLSLLSHLHGLHSAECLLNWNRRMKIAIGSAEGISYLHHQATPHIIHRNVKASNVLLDSDFQARVADFGFAKLVPDGATHVTTNVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGKRPIEKKNAGVQLTITDWALPLACERKFGELADLKLGGDYVEEELRRVVLVALVCSNSQPEKRPTMIEVVELLKGEAREKLAKLEENEIFKNSEVVENHNNEVSITEDG 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1080661 1083508 + Conep17aG0023300.1 Cone17ag0230 455707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0230 347 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Cone17ag0230 347 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524(InterPro)
Cone17ag0230 347 Coils Coil 305 325 - -
Cone17ag0230 347 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Cone17ag0230 347 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Cone17ag0230 347 PANTHER OS01G0750732 PROTEIN 22 318 IPR050885 -
Cone17ag0230 347 Gene3D Transferase(Phosphotransferase) domain 1 116 330 - -
Cone17ag0230 347 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag0230 347 Pfam Protein tyrosine and serine/threonine kinase 42 309 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag0230 347 Gene3D Phosphorylase Kinase; domain 1 10 115 - -
Cone17ag0230 347 PIRSF ILK 10 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0230 Cone-Chr17:1080661 Cone18ag1318 Cone-Chr18:9141697 2.18E-136 dispersed
Cone16ag0635 Cone-Chr16:7938966 Cone17ag0230 Cone-Chr17:1080661 3.88E-178 wgd
Cone17ag0230 Cone-Chr17:1080661 Cone20ag1182 Cone-Chr20:7952997 3.12E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82248 PF00153 Mito_carr 1.10E-25 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0230 - - - 0.0