Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag0256 | ATGGCGGATGACAAGAGCATTAGCTTGGAGGAGATCAAGAAGGAGAATGTCGATCTAGATCTTGTTCTGTTAAATCATCAGAGATTTTCTTACAGCCGTTTACCTAAGCTTGTCCAGATGATTACAGGCGAATCCAAGATGAGTTTGATTTGTGAAAATGGCGACACTATTTTGTTTTTACAGGAGCGCATACCAATTGGGGAAGTGTTTGAACAACTGAAATGTTCGAGAGAGGGTTTGACGACCGATGAAGGTGAAACGAGGACCCAACTTTTTGGCCCAAACAAGCTAGAAGAAAAGAAGGAAAGCAAGTTTCTGAAGTTCCTTGGTTTTATGTGGAATCCTCTTTCGTGGGTCATGGAGGCTGCAGCTATCATGGCCATTGTTTTGGCCAACGGAGAGGGCAAACCACCAGACTGGCCCGATTTTGTGGGTATCATGGTATTGCTTATCATTAATTCCACCATAAGCTTCATAGAGGAAAACAATGCTGGCAACGCTGCAGCAGCACTTATGTCGGGACTTGCTCCAAAAACCAAAGTTCTCAGAGATGGCAGGTGGAGTGAGCAAGAGGCTGCAATTTTAGTACCAGGGGATATAATAAGCATCAAGTTGGGAGATATCGTACCAGCAGATGCACGTCTGTTGGAAGGAGACCCACTCAAGATTGACCAGTCTGCCCTCACTGGTGAATCTCTACCTGTAACAAGGAACCCAGGTGATGAAGTCTTCTCCGGTTCAACTGTCAAGCAAGGTGAGCTTGAGGCTATTGTAATTGCCACTGGGGTCCACACTTTCTTCGGCAAGGCTGCACACTTGGTTGACAGCACAAACCATCAAGGGCACTTCCAAAAGGTTTTGACCGACATTGGAAACTTTTGCATCTGTTCGATTGCTGTTGGGATGGTGATAGAAATTGTGGTAATGTACCCAATTCAGCACCGCAGATACAGGAGTGGAATTGACAATCTCTTGGTCCTTCTCATTGGAGGGATTCCAATTGCCATGCCTACAGTGCTGTCAGTGACTATGGCTATTGGATCCCACAGGCTATCACAGCAAGGTGCAATCACCAAGAGGATGACTGCGATTGAAGAGATGGCTGGAATGGATGTTCTCTGCAGTGACAAGACAGGAACGCTTACTCTTAATAAGCTTACGGTAGATAAGGGCATGATCGAGGTGTTTATAAAAGATATTGACAAGGACCATTTACTTCTGCTTGGAGCTAGAGCTTCCAGGACTGAGAATCAGGATGCTATTGATGCATGTATTGTCGGAATGTTGGGTGATCCTAAGGAGGCTAGAGAAGGTATCACTGAGGTGCATTTCTTGCCCTTTAACCCAGTGGACAAGCGTACAGCATTGACATATATTGACAAAGAAGGCACCTGGCACCGTGTCAGCAAAGGTGCACCAGAGCAGATCATTGAGCTCTGCAACCTAAAGGGTGATCTCGAGAAGAAGGCTCATGCTATAATTGCCAAGTTTGCTGATCGCGGTCTCCGCTCTCTAGCCATTGCAAGACAGATTGTGCCAGAGAAAACAAAGGAGAGCTCAGGAGGACCATGGCAATTTGTTGGCCTCTTGCCTCTCTTTGATCCTCCAAGGCATGACAGTGCAGAGACCATCCGCCGTGCCCTCCACCTTGGTGTCAATGTTAAGATGATCACAGGTGACCAGCTTGCCATTGGAAAGGAGACTGGTCGGAGGCTTGGTATGGGAACCAACATGTATCCCTCTTCCACACTCCTTGGGGACACCAAGGACGAGTCAGTAGCATCCCTTCCTATTGATGAGCTTATTGAGAAGGCCGATGGCTTTGCTGGCGTTTTCCCTGAGCATAAATATGAAATTGTGAAGAGGCTGCAAGACAGGAAGCATATATGTGGTATGACTGGAGATGGTGTGAATGACGCCCCTGCTTTGAAACGGGCAGATATTGGTATTGCAGTAGCTGATGCAACTGATGCAGCAAGGGGTGCTTCAGATATAGTTCTTACAGAGCCAGGACTTAGTGTGATTGTGAGTGCTGTCTTGACAAGTAGAGCCATTTTCCAGAGAATGAAGAACTACACCATCTATGCTGTCTCTATTACTATCCGTATCGTGCTGGGTTTCTTGCTTCTAGCTCTTATCTGGAAATTCGATTTCTCACCTTTCATGGTCTTGATCATTGCCATACTCAATGATGGAACCATTATGACTATCTCTAAAGATAGAGTGAAGCCATCTCCTTTGCCGGACTCATGGAAGCTTAAGGAGATCTTTGCTACAGGGATTGTCCTTGGCTCTTATCTTGCTGTCATGACCGTCTTCTTCTTCTGGATTGCTAACAGTACTAACTTCTTTTCGGAAAGATTCGGTGTAAGATCTATCGGGGGCAACCATGAGGAGCTCATAGCCGCTATTTACCTTCAAGTAAGTATTATCAGTCAAGCACTCATCTTCGTGACGAGATCTCGAAGCTGGTCCTATGTTGAACGACCGGGTCTCTTGCTTCTCGCTGCCTTCTTCATAGCCCAACTGGTTGCTACCTTAATTGCTGTGTATGCACACTGGAGCTTCGCTAGGATTAAGGGGGTTGGATGGGGCTGGGCTGGGATTATCTGGCTCTACAGCATCATCATCTACATCCCTATGGATATTCTGAAATTCATCATCCGATATGCATTGAGCGGCAAGGCCTGGGATAATCTACTCCAAAACAAGACTGCTTTCACAACAAAGAAGGATTACGGAAGGGGCGAGAGAGAGGCACAATGGGCTGCAGCGCAACGTACTCTTCACGGTCTTCAACCCCCAGAAACTTCTGATCTGCTCCCAGAAAAGAGCAGTTACCGGGAATTGTCCGAAATCGCCGAACAGGCTAAGCGCCGGGCCGAGGTTGCTCGGTTGAGGGAGCTTAACACTCTAAAAGGCCACGTTGAGTCCGTGGTGAAACTCAAGGGTCTGGATATTGAAACAATCCAACAGCACTACACCGTTTAA | 2991 | 46.81 | MADDKSISLEEIKKENVDLDLVLLNHQRFSYSRLPKLVQMITGESKMSLICENGDTILFLQERIPIGEVFEQLKCSREGLTTDEGETRTQLFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIVLANGEGKPPDWPDFVGIMVLLIINSTISFIEENNAGNAAAALMSGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGDEVFSGSTVKQGELEAIVIATGVHTFFGKAAHLVDSTNHQGHFQKVLTDIGNFCICSIAVGMVIEIVVMYPIQHRRYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKGMIEVFIKDIDKDHLLLLGARASRTENQDAIDACIVGMLGDPKEAREGITEVHFLPFNPVDKRTALTYIDKEGTWHRVSKGAPEQIIELCNLKGDLEKKAHAIIAKFADRGLRSLAIARQIVPEKTKESSGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSTLLGDTKDESVASLPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLAVMTVFFFWIANSTNFFSERFGVRSIGGNHEELIAAIYLQVSIISQALIFVTRSRSWSYVERPGLLLLAAFFIAQLVATLIAVYAHWSFARIKGVGWGWAGIIWLYSIIIYIPMDILKFIIRYALSGKAWDNLLQNKTAFTTKKDYGRGEREAQWAAAQRTLHGLQPPETSDLLPEKSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIETIQQHYTV | 996 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 1209541 | 1214681 | - | Conep17aG0025900.1 | Cone17ag0256 | 455733 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag0256 | 996 | Coils | Coil | 947 | 967 | - | - | |
| Cone17ag0256 | 996 | FunFam | Plasma membrane ATPase | 177 | 261 | - | - | |
| Cone17ag0256 | 996 | SMART | Cation_ATPase_N_a_2 | 60 | 132 | IPR004014 | - | |
| Cone17ag0256 | 996 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 62 | 919 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cone17ag0256 | 996 | NCBIfam | HAD-IC family P-type ATPase | 608 | 719 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0256 | 996 | NCBIfam | HAD-IC family P-type ATPase | 146 | 393 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0256 | 996 | SFLD | p-type atpase | 356 | 685 | IPR044492 | - | |
| Cone17ag0256 | 996 | FunFam | ATPase 4 plasma membrane-type | 619 | 860 | - | - | |
| Cone17ag0256 | 996 | CDD | P-type_ATPase_H | 79 | 886 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cone17ag0256 | 996 | PRINTS | P-type cation-transporting ATPase superfamily signature | 528 | 539 | - | - | |
| Cone17ag0256 | 996 | PRINTS | P-type cation-transporting ATPase superfamily signature | 633 | 652 | - | - | |
| Cone17ag0256 | 996 | PRINTS | P-type cation-transporting ATPase superfamily signature | 550 | 560 | - | - | |
| Cone17ag0256 | 996 | PRINTS | P-type cation-transporting ATPase superfamily signature | 374 | 388 | - | - | |
| Cone17ag0256 | 996 | PRINTS | P-type cation-transporting ATPase superfamily signature | 224 | 238 | - | - | |
| Cone17ag0256 | 996 | PRINTS | P-type cation-transporting ATPase superfamily signature | 656 | 668 | - | - | |
| Cone17ag0256 | 996 | PRINTS | H+-transporting ATPase (proton pump) signature | 490 | 508 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0256 | 996 | PRINTS | H+-transporting ATPase (proton pump) signature | 605 | 621 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0256 | 996 | PRINTS | H+-transporting ATPase (proton pump) signature | 633 | 649 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0256 | 996 | PRINTS | H+-transporting ATPase (proton pump) signature | 805 | 826 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0256 | 996 | PRINTS | H+-transporting ATPase (proton pump) signature | 664 | 689 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone17ag0256 | 996 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 79 | 851 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cone17ag0256 | 996 | Gene3D | - | 139 | 860 | - | - | |
| Cone17ag0256 | 996 | Gene3D | - | 177 | 261 | - | - | |
| Cone17ag0256 | 996 | SUPERFAMILY | HAD-like | 370 | 680 | IPR036412 | - | |
| Cone17ag0256 | 996 | Pfam | Cation transporter/ATPase, N-terminus | 63 | 126 | IPR004014 | - | |
| Cone17ag0256 | 996 | Gene3D | - | 371 | 670 | IPR023214 | - | |
| Cone17ag0256 | 996 | Pfam | E1-E2 ATPase | 176 | 353 | - | - | |
| Cone17ag0256 | 996 | Gene3D | - | 945 | 996 | - | - | |
| Cone17ag0256 | 996 | FunFam | Plasma membrane ATPase | 526 | 681 | - | - | |
| Cone17ag0256 | 996 | FunFam | Plasma membrane ATPase | 386 | 533 | - | - | |
| Cone17ag0256 | 996 | SFLD | C1.7: P-type atpase like | 356 | 685 | - | - | |
| Cone17ag0256 | 996 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 376 | 382 | IPR018303 | - | |
| Cone17ag0256 | 996 | SUPERFAMILY | Calcium ATPase, transduction domain A | 177 | 274 | IPR008250 | - | |
| Cone17ag0256 | 996 | Gene3D | - | 386 | 533 | IPR023299 | GO:0000166(InterPro) | |
| Cone17ag0256 | 996 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 63 | 892 | IPR023298 | - | |
| Cone17ag0256 | 996 | Pfam | haloacid dehalogenase-like hydrolase | 370 | 647 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0256 | Cone-Chr17:1209541 | Cone7ag1759 | Cone-Chr7:11619413 | 0 | dispersed | |
| Cone17ag0256 | Cone-Chr17:1209541 | Cone4ag0618 | Cone-Chr4:2846097 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag0256 | K01535 | - | mdm:103443928 | 1618.98 |