Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0257 ATGGCTCGACCACAACAACGCTACCGGGGAGTCCGCCAACGGCACTGGGGCTCCTGGGTCTCCGAAATCCGCCACCCCATTCTGAAGACCAGAATATGGCTTGGCACATTTGAAACGGCGGAGGATGCAGCAAGAGCATACGATGAAGCAGCAAGACTTATTTGTGGGTCCAAAGCACGTACAAATTTCCCATACAATCCTAATGATCACCACTCTCATTCATCATCTTCATCATCTAAGCAACTTCTCTCACCTACTTTGACGGAAAAATTACACAAATGCCATATGACTTCTCTTCAAATGGGCAAGAAACAAGTTGATCATAATAAAAGGCAACAAATAGTGTATACTAATGCTCCTCTGGCTAACAACAGCAATAATGAGGGCATTTCCGGGACTGGTGCTATTATTAGCGGAATGTATATCGACTGGCCGTGGTCGGAGTCGAATATTCCGGCAGCCACTTGGACTGGCCGGGAAAGTAGCTGTCAAGTGACGATGGATGATAAGCAGCAATTTATTCAGCCTCTTGAAGATGATCATATAGAGCAAATGATACAAGAGCTACTTGATCCTTCTGGGTCTATTATTGAGCTTTTCCCTTTTAATATTGTTCCTACTAATTAG 627 44.5 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLICGSKARTNFPYNPNDHHSHSSSSSSKQLLSPTLTEKLHKCHMTSLQMGKKQVDHNKRQQIVYTNAPLANNSNNEGISGTGAIISGMYIDWPWSESNIPAATWTGRESSCQVTMDDKQQFIQPLEDDHIEQMIQELLDPSGSIIELFPFNIVPTN 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1218031 1218777 - Conep17aG0026000.1 Cone17ag0257 455734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0257 208 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cone17ag0257 208 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0257 208 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cone17ag0257 208 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0257 208 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0257 208 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0257 208 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0257 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 121 - -
Cone17ag0257 208 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag0257 208 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0257 Cone-Chr17:1218031 Cone18ag0578 Cone-Chr18:2866079 2.54E-62 dispersed
Cone17ag0252 Cone-Chr17:1193973 Cone17ag0257 Cone-Chr17:1218031 2.85E-20 proximal
Cone17ag0257 Cone-Chr17:1218031 Cone17ag0995 Cone-Chr17:7664321 5.14E-56 wgd
Cone17ag0257 Cone-Chr17:1218031 Cone4ag1757 Cone-Chr4:12906148 1.34E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45016 PF02309 AUX_IAA 1.30E-40 CL0072 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0257 - - - 0.0