Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag0266 ATGGAAAATGAGGATGTTTCATCAGCACCTTCTACCCCAGCCACACCAGGCACACCTGCTGCTCCACTTTTTAGTAGTAGTTTCAAGCTAAGTTCTGCCATTAATGGCAGAAAATCACTCCTCAAAAGCAGCTGCAAATGCTTTACTGCAAATGTTGTTGAGGAATGGGCCATGGAAGAAGGCAATAAACTCTCTTGCTCTTTCCCACCACCTCCTGTATCACTTGCACGAAAGGTAGGAGCTGAATTTATAGGCACACTTATACTGATTTTTGCTGGGACAGCTACTGCTACAGTGAACCAAAAGACACAAGGATCTGAAACACTCATTGGTCTGGCCGGATCAACAGGTTTAGCTGTTATGATTGTGATTCTGTCAACTGGGCACATTTCTGGGGCCCACCTTAACCCTGCTGTCACCATTGCTTTTGCTGCCTTAAAGCACTTCCCATGGAAACATGTGCCAGTTTATATAGGAGCACAAATAGTAGCATCTATATGTGCTGCTTTTGCACTAAAGGGGATATTTCACCCTATAATGGGTGGAGGAGTTACAGTTCCTTCAGGTGGATTTGGCCAAGCTTTTGCTCTTGAATTCATAATCAGCTTCAACCTCATGTTTGTTGTTACTGCTGTCGCTACCGACACTAGAGCTGTAGGAGAACTAGCCGGATTCGCAGTCGGAGCTACTGTCATGCTCAACATACTCATTGCCGGGGAAACAACAGGGGGATCGATGAATCCAGTAAGAACACTAGGACCAGCCTTGGCAGCAAATAATTTCAAAGGGTTATGGGTATATCTTACAGCCCCCATTCTTGGGGCACTTTGTGGGGCAGGAACATATTCTGCTGTTAAGTTGCCGGTGGAAGATGACGAAAAGTGA 885 45.54 MENEDVSSAPSTPATPGTPAAPLFSSSFKLSSAINGRKSLLKSSCKCFTANVVEEWAMEEGNKLSCSFPPPPVSLARKVGAEFIGTLILIFAGTATATVNQKTQGSETLIGLAGSTGLAVMIVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQIVASICAAFALKGIFHPIMGGGVTVPSGGFGQAFALEFIISFNLMFVVTAVATDTRAVGELAGFAVGATVMLNILIAGETTGGSMNPVRTLGPALAANNFKGLWVYLTAPILGALCGAGTYSAVKLPVEDDEK 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1262125 1264058 + Conep17aG0026900.1 Cone17ag0266 455743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag0266 294 PRINTS Major intrinsic protein family signature 228 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0266 294 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0266 294 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0266 294 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0266 294 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0266 294 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0266 294 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Cone17ag0266 294 Gene3D Glycerol uptake facilitator protein. 51 293 IPR023271 -
Cone17ag0266 294 FunFam Aquaporin NIP2-1 65 294 - -
Cone17ag0266 294 PANTHER AQUAPORIN NIP2-1 72 288 IPR034294 -
Cone17ag0266 294 SUPERFAMILY Aquaporin-like 74 288 IPR023271 -
Cone17ag0266 294 Pfam Major intrinsic protein 74 282 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag0266 294 CDD MIP 77 282 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0266 Cone-Chr17:1262125 Cone18ag0574 Cone-Chr18:2847073 8.87E-116 dispersed
Cone17ag0266 Cone-Chr17:1262125 Cone20ag1150 Cone-Chr20:7806133 4.89E-189 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag0266 K09874 - cit:102629705 461.455