Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag0270 | ATGGCGGCGACGGGGTCTAATTCTGGGCAGCCACAGTTCATGACAAGCGTTGGAAATAGAAGTTTTGCGGACACGCCTTTGATTGAGAATTCAGAGACTGGTCAGATCGTTGTTCCAGATAAGACAAGCTGGAAAAACTTATTTGCATACATGGGTCCTGGGTTTCTTGTTTCTATTGCATATATTGATCCCGGAAATTTTGAAACTGATCTACAGGCAGGAGCACAGTACAAGTATGGGTTACTTTGGATCATATTAGTGGCTTCTTGTGCTGCTCTCCTAATTCAATCCCTGGCCGCCAATCTTGGAGTAGTTACAGGAAAGCATTTAGCAGAGCACTGCAGAAAGGAATACCATAAAGTGCCAAACTTCATTCTATGGGTTCTTGCTGAGATTTCAGTGGTTGCATGTGACATACCTGAGGTCATAGGGACAGCTTTTGCATTGAACATGCTGTTCAAAATTCCTCTTTGGTGTGGAGTTCTTCTGACAGGGTTCAGTACACTAATCCTTCTAGCATTACAACAATATGGGGTTAGGAAGCTTGAGTTCTTGATTGCATTTCTAGTGTTAACCATTGCTGGATGCTTTTTCCTGGAGCTTGGGTACGCAGAGCCAGATGCTAAAGAAGTTCTCGATGGACTATTTATCCCTCAACTCAAAGGAAATGGTGCCACTGGCCTTGCAATTTCTCTTCTCGGCGCCATGGTTATGCCTCACAATCTCTTCCTCCACTCTGCATTGGTGCTTTCTAGGAAAATACCACGATCTGTTCGGGGCATCACGGAAGCTTGTAGATTTTATCTGATTGAGAGTGGCATAGCTCTTATGGTGGCCTTCCTCATAAATGTGTCCGTCATTTCCGTGAGTGGTTCAGTTTGCAGTTCCCCAAATTTAAATTCCGAAGATCAGATGAGCTGCGAGGACTTGGACTTGAACAAAGCCTCATTTTTACTCAGAAATGTCTTGGGTAGATGGAGTTCAAAGATTTTTGCAATTGCTTTGTTGGCATCCGGACAGAGCTCTACCATAACAGGCACATATGCAGGACAATACGTTATGCAGGGATTTCTCGACTTACGATTGAAACCATGGATTCGGAACTTTCTAACCCGAAGCTTGGCAATAGTCCCTAGTTTGATTGTTGCTGTCATTGGTGGCTCAGCTGGGGCTGGGAAGCTAATCATCATAGCTTCCATGATATTGTCATTTGAGCTCCCCTTTGCTCTCATTCCACTTCTCAAGTTTACAAGCTCCAAGACCAAGATGGGCCCACATGTCAACTCTATTGCAGTCTCAACTGTGACCTGGATTGTAGGAAGCCTAATCATGGCCATAAATATATATTACATTATAACCGGATTTATCAATTTGCTTCTTCACGGGCACTTAGAGATGGTGGGCGTCGTATTTCTCGGGATATTGGGCTTCTCAGGTATAGCAGTGTATCTGGCCGGGATTGGTTACCTAGTTTTTCGAAAAAATAAGGAAGTTACTCACCTTTTGGCATTAACAACACCTGAAAGTCACCAAACAGACAATGAATCTGGGAATACAGGCATGCTTTGTGTCCCTAGAGAAGACATAGTAAGCATGCAGTTGCCTCAGAGAAGGAGCTCAGCTGAAGAATTTGACTGA | 1638 | 43.89 | MAATGSNSGQPQFMTSVGNRSFADTPLIENSETGQIVVPDKTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQYKYGLLWIILVASCAALLIQSLAANLGVVTGKHLAEHCRKEYHKVPNFILWVLAEISVVACDIPEVIGTAFALNMLFKIPLWCGVLLTGFSTLILLALQQYGVRKLEFLIAFLVLTIAGCFFLELGYAEPDAKEVLDGLFIPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGITEACRFYLIESGIALMVAFLINVSVISVSGSVCSSPNLNSEDQMSCEDLDLNKASFLLRNVLGRWSSKIFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWIRNFLTRSLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGPHVNSIAVSTVTWIVGSLIMAINIYYIITGFINLLLHGHLEMVGVVFLGILGFSGIAVYLAGIGYLVFRKNKEVTHLLALTTPESHQTDNESGNTGMLCVPREDIVSMQLPQRRSSAEEFD | 545 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 1273309 | 1278203 | - | Conep17aG0027300.1 | Cone17ag0270 | 455747 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag0270 | 545 | PRINTS | Natural resistance-associated macrophage protein signature | 179 | 200 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | PRINTS | Natural resistance-associated macrophage protein signature | 367 | 384 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | PRINTS | Natural resistance-associated macrophage protein signature | 399 | 418 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | PRINTS | Natural resistance-associated macrophage protein signature | 229 | 252 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | PRINTS | Natural resistance-associated macrophage protein signature | 339 | 358 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | PRINTS | Natural resistance-associated macrophage protein signature | 126 | 152 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | PRINTS | Natural resistance-associated macrophage protein signature | 154 | 173 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 31 | 500 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | Pfam | Natural resistance-associated macrophage protein-like | 67 | 429 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | NCBIfam | Nramp family divalent metal transporter | 52 | 420 | - | - | |
| Cone17ag0270 | 545 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 46 | 423 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone17ag0270 | 545 | Hamap | Divalent metal cation transporter MntH [mntH]. | 32 | 455 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0270 | Cone-Chr17:1273309 | Cone6ag1430 | Cone-Chr6:11472817 | 6.76E-100 | dispersed | |
| Cone20ag0432 | Cone-Chr20:2151827 | Cone17ag0270 | Cone-Chr17:1273309 | 4.36E-210 | transposed | |
| Cone6ag1517 | Cone-Chr6:11979193 | Cone17ag0270 | Cone-Chr17:1273309 | 1.59E-186 | transposed | |
| Cone17ag0270 | Cone-Chr17:1273309 | Cone20ag1143 | Cone-Chr20:7778748 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag0270 | K21398 | - | mdm:103417812 | 882.478 |